PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J00002.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GRAS
Protein Properties Length: 749aa    MW: 80645 Da    PI: 6.5525
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.93e-1263777362374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lLl+cAeavs+++le+a+++L ++s+la+p g++ qR+aayf eA++arl++s+ ++y alp+ + s    ++ ++a+++f+ +sP++kfs
  Migut.J00002.1.p 377 LTLLLQCAEAVSADNLEEANTMLLEISQLATPFGTSAQRVAAYFSEAMSARLVSSCLGIYTALPTVPHS----QKMASAFQVFNGISPFVKFS 465
                       579*************************************************************99996....89999*************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s+++le+tg+rL++fAe+lg+pfef++ va+r+ 
  Migut.J00002.1.p 466 HFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----STDALEATGKRLSDFAEKLGLPFEFSP-VAERVG 553
                       *******************************************************....9**************************.7***** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +l++e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysa+fdsl a +++ese
  Migut.J00002.1.p 554 NLNPERLNVSKREAVAVHWLQ--HSLYDVTGSDTN----TLSLLQRLCPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSAMFDSLGACYGEESE 639
                       ********************9..999999999999....**********************.899**************************** PP

              GRAS 281 erikvErellgreivnvvacegaerre...rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       er+ vE++ll+rei+nv+   g +r      + ++++Wre+le++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++
  Migut.J00002.1.p 640 ERHIVEQQLLSREIRNVLGVGGPSRSStsiSMVKFNNWREKLEQSGFKGISLAGNAAAQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTA 732
                       ***********************99872335789*********************************************************** PP

              GRAS 371 SaWr 374
                       SaWr
  Migut.J00002.1.p 733 SAWR 736
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.541350716IPR005202Transcription factor GRAS
PfamPF035141.0E-123377736IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MAAKAFALVQ ADAINGGTAA GETPALVSNN NPSRNPTDHI VSPPQGSKMV ARKRAASEME  60
LHAAAARFPR RTVGQVNADN YSPVLLANNN NNINNISVPN PIPQQLVVPN YSTGTMMMMP  120
SSSSSSNVNI LMTSGSGSDN TAAAASASAS ASTNKNNNNN NNNNNNNFMD SNSMTNTTTS  180
SGAAPSVCVF SGLPLFPPDR NPVMMEDTTT ATATTTAWID GIIKDLIQGS SNHVSIHQLI  240
LNVREIIHPC NPNLATLLEY RLRSLTTDQD HQARLISKPP PPILSINNSL LMLDCPSPPG  300
NPYHLQNMVI ASTFNPATTT TTSTAPTPCV VSPPEQQNDR LTTTAAAAAT SPPSLIIKER  360
KEEIRQKQKD EQGLHLLTLL LQCAEAVSAD NLEEANTMLL EISQLATPFG TSAQRVAAYF  420
SEAMSARLVS SCLGIYTALP TVPHSQKMAS AFQVFNGISP FVKFSHFTAN QAIQEAFERE  480
DRVHIIDLDI MQGLQWPGLF HILASRPGGP PFVRLTGLGN STDALEATGK RLSDFAEKLG  540
LPFEFSPVAE RVGNLNPERL NVSKREAVAV HWLQHSLYDV TGSDTNTLSL LQRLCPKVVT  600
VVEQDLSHAG SFLGRFVEAI HYYSAMFDSL GACYGEESEE RHIVEQQLLS REIRNVLGVG  660
GPSRSSTSIS MVKFNNWREK LEQSGFKGIS LAGNAAAQAT LLLGMFPSDG YTLVEDNGAL  720
KLGWKDLCLL TASAWRPSFP THTASRHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03607373380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J00002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012832329.10.0PREDICTED: protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2G9G7V00.0A0A2G9G7V0_9LAMI; Uncharacterized protein
STRINGMigut.J00002.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein