PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I01184.2.p | ||||||||
Common Name | LOC105976000, MIMGU_mgv1a010778mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 303aa MW: 32902.4 Da PI: 6.5799 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.8 | 1.1e-16 | 222 | 258 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g++tLCnaCGl+++ kg+ Migut.I01184.2.p 222 CRHCGTSEkcTPMMRRGPEGPRTLCNACGLMWANKGT 258 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.2E-12 | 79 | 114 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.421 | 79 | 114 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.1E-13 | 82 | 113 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.295 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.3E-15 | 146 | 188 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.407 | 216 | 272 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.7E-11 | 216 | 269 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-12 | 219 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 220 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.6E-14 | 222 | 258 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.29E-14 | 222 | 264 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 222 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDRMHGSDAG IMHYLQDQHN LGIHHHMSNG NSIDGDEHED NNNIGNTSGG INESMDEDVT 60 ADMGNQLDNH GALISQIGDI ENSNQLTLSF QGQVYVFDSV SAEKVQAVLL LLGGKEAPTN 120 HPAAPVSTSS NKGLPSTPQK LNVPQRMASL LRFREKRKER NFDKKIRYTV RKEVALRMQR 180 KKGQFTSSKP THDDCTSGGS SWDSGQNWGA DGSGSQVQDI CCRHCGTSEK CTPMMRRGPE 240 GPRTLCNACG LMWANKGTLR DLSKATTPVG TNPLRNISEE RNGSFEAEEM VLSATGNGND 300 SS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I01184.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856726.1 | 0.0 | PREDICTED: GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 1e-105 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A022PXZ5 | 0.0 | A0A022PXZ5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I01184.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-105 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I01184.2.p |
Entrez Gene | 105976000 |
Publications ? help Back to Top | |||
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