PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01184.1.p
Common NameLOC105976000, MIMGU_mgv1a010778mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family GATA
Protein Properties Length: 303aa    MW: 32902.4 Da    PI: 6.5799
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16222258135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Migut.I01184.1.p 222 CRHCGTSEkcTPMMRRGPEGPRTLCNACGLMWANKGT 258
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-1279114IPR010399Tify domain
PROSITE profilePS5132014.42179114IPR010399Tify domain
PfamPF062002.1E-1382113IPR010399Tify domain
PROSITE profilePS5101713.295146188IPR010402CCT domain
PfamPF062031.3E-15146188IPR010402CCT domain
PROSITE profilePS501149.407216272IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-11216269IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-12219271No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14220263IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-14222258IPR000679Zinc finger, GATA-type
CDDcd002021.29E-14222264No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDRMHGSDAG IMHYLQDQHN LGIHHHMSNG NSIDGDEHED NNNIGNTSGG INESMDEDVT  60
ADMGNQLDNH GALISQIGDI ENSNQLTLSF QGQVYVFDSV SAEKVQAVLL LLGGKEAPTN  120
HPAAPVSTSS NKGLPSTPQK LNVPQRMASL LRFREKRKER NFDKKIRYTV RKEVALRMQR  180
KKGQFTSSKP THDDCTSGGS SWDSGQNWGA DGSGSQVQDI CCRHCGTSEK CTPMMRRGPE  240
GPRTLCNACG LMWANKGTLR DLSKATTPVG TNPLRNISEE RNGSFEAEEM VLSATGNGND  300
SS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01184.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856726.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8GXL71e-105GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A022PXZ50.0A0A022PXZ5_ERYGU; Uncharacterized protein
STRINGMigut.I01184.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-105ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]