PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I01075.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 60797.9 Da PI: 6.1678 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 241.9 | 2.7e-74 | 155 | 534 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 ++lL cA a+++++ +++q++L l++las +gd+++Rla++ ++AL ++l++ s+ + ++ ++++ + +n + +l f+++ P++++ Migut.I01075.1.p 155 EQLLSPCAAAITARNPSRVQHFLYVLHDLASLNGDANHRLAFHGLRALTHHLSSsSGGSGFS--TSNTFAASNPKFFRDSLIRFNDINPWFRI 245 68999************************************************932223333..3333333445555555556********** PP GRAS 94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeel 172 + +aN+ Il+ ++++ +++Hi+D+++s+GlQWp+Ll++L+ R+ ++pp +R+T+v++p+ + + + ++L +A+ + Migut.I01075.1.p 246 PNNVANSSILQILAEQkhptNTLHILDIGVSHGLQWPTLLEELTRRTgGPPPLVRLTTVDPPTGNrnstaapfaHGPQDYDFSSKLLGYAKDI 338 ************99987888899************************55666*********987788889999888888999*********** PP GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerfleal 261 +++++++ + +l++l++++++ ++ +E+l+++ +++lh+l ++ ++er+e+Lkl+++l+Pk ++++e++ad+ n ++F+++f++ + Migut.I01075.1.p 339 NINLQIDRIENFHLQNLNPQTIKSSSeEETLIICAQFRLHNLN---HTNPDERTEFLKLLRGLNPKGLILSENNADCscnNCGDFATGFSRRV 428 ********7666**********9888799*************8...77777789*******************9766446778********** PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 e + +fds++ + + r + Er++++ e+ +++ g++ e++ekW+er+++aGF+ ++e++++ ak+llrk++ +++ rv+e Migut.I01075.1.p 429 ENLWRFFDSTSIAY----KGRESEERKMMEAEAAKMLVSVGEM----SEKKEKWSERMKSAGFRREIFGEETVDGAKALLRKYDsNWEIRVDE 513 **********7664....5555555555666688888888887....79999********************************9999***** PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++g++ l Wk++++ ++S W+ Migut.I01075.1.p 514 KDGCVGLFWKGETVSFCSLWK 534 ********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.008 | 128 | 513 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-72 | 155 | 534 | IPR005202 | Transcription factor GRAS |
Gene3D | G3DSA:3.40.50.150 | 3.0E-4 | 254 | 485 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MTMEEPEPNT PSDHILGWIG ESISYFPTFF DDPYDTGDFS GDSWWVQPQD LDQELIGSSS 60 NSFNAAMPTT TAAAPTPTES IVSDQSSIPL DSTKKRKLLD NSSPKVSRKN TNRLEDSTAG 120 VAEPPARRPV ANRRVNNRSA GNSSNGNNKE GRWAEQLLSP CAAAITARNP SRVQHFLYVL 180 HDLASLNGDA NHRLAFHGLR ALTHHLSSSS GGSGFSTSNT FAASNPKFFR DSLIRFNDIN 240 PWFRIPNNVA NSSILQILAE QKHPTNTLHI LDIGVSHGLQ WPTLLEELTR RTGGPPPLVR 300 LTTVDPPTGN RNSTAAPFAH GPQDYDFSSK LLGYAKDINI NLQIDRIENF HLQNLNPQTI 360 KSSSEEETLI ICAQFRLHNL NHTNPDERTE FLKLLRGLNP KGLILSENNA DCSCNNCGDF 420 ATGFSRRVEN LWRFFDSTSI AYKGRESEER KMMEAEAAKM LVSVGEMSEK KEKWSERMKS 480 AGFRREIFGE ETVDGAKALL RKYDSNWEIR VDEKDGCVGL FWKGETVSFC SLWKVIDFGV 540 EDCLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-30 | 151 | 534 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 8e-31 | 151 | 534 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 8e-31 | 151 | 534 | 30 | 419 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I01075.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856585.1 | 0.0 | PREDICTED: nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2G9HXR4 | 0.0 | A0A2G9HXR4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.I01075.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-144 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.I01075.1.p |
Publications ? help Back to Top | |||
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