PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01073.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 499aa    MW: 54720.2 Da    PI: 6.7167
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15240299155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Migut.I01073.1.p 240 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 299
                       789******************655454478446*************************98 PP
2AP245.22.3e-14344393355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Migut.I01073.1.p 344 FRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 393
                       89**************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-17240309IPR016177DNA-binding domain
CDDcd000189.35E-21240309No hitNo description
PROSITE profilePS5103218.755241307IPR001471AP2/ERF domain
SMARTSM003802.8E-29241313IPR001471AP2/ERF domain
PfamPF008479.9E-12241299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15241308IPR001471AP2/ERF domain
PRINTSPR003677.7E-6242253IPR001471AP2/ERF domain
SMARTSM003807.6E-34343407IPR001471AP2/ERF domain
PROSITE profilePS5103218.545343401IPR001471AP2/ERF domain
CDDcd000183.55E-23344402No hitNo description
SuperFamilySSF541711.11E-16344401IPR016177DNA-binding domain
PfamPF008474.7E-9344393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17344401IPR001471AP2/ERF domain
PRINTSPR003677.7E-6383403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIGGDGD QDDAAAAAAV EADNNGGFPV DVIRSDGSFS LFDSNHYWRY  60
DNGMNGPSPS EEAPKFEDFL GCCYSNSPPP NDARPAGEIN MNAPPSFMCD GVDRTTEDFI  120
ANNHPSLFFH PYQYSIVPTA NPHAAVYGGA GGGGAPAPAD FKSWSLQQTD HKPAVDTFRR  180
CDFQGLSLTV SPSSQTDIVV GAAPPHVAAD GKKRVAPKFS SGVKEAVPRK SIDTFGQRTS  240
QFRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGP  300
TTHINFPLST YEQELQEMDN MTRQEFVAHL RRKSSGFLCG DFLFRGVTRH HQHGRWQARI  360
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGTSAVTNF DIIRYDVKRI CSSTTLIAGD  420
LAKRSPTRNH AVGPTDHYNS SASSSASPAR ANNNNGNNNC RAIVTFNMES STSDNELMAD  480
DNTTWNINGG NIDQWAES*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01073.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856745.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-134AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A022Q2F10.0A0A022Q2F1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-128AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]