PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I01028.4.p | ||||||||
Common Name | MIMGU_mgv1a002054mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 741aa MW: 84701.2 Da PI: 8.2824 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83 | 5.1e-26 | 30 | 116 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p Migut.I01028.4.p 30 EYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPTGKWHIHSFVKEHNHELLP 116 69***************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-24 | 30 | 116 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-23 | 227 | 320 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.151 | 505 | 543 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.0E-7 | 516 | 541 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.2E-7 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MEAASTSAPS ISSLEPTDDM EFDTHEAAYE YYKEYAKSVG FGTAKLSSRR SRASKEFIDA 60 KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRKPTGK WHIHSFVKEH NHELLPDQAH 120 FFRSHRNLDS VNNSDARVKK KKVLKKYGAY QFSGTSIENV IRSQHDRGRF LSLEEGGAQS 180 ILEFCSQMHE ENPKFFYALD FNEEHRLRNV FWVDAKGVDD FTHFGDVVSF DTTYFQSKYR 240 IPLVLFIGVN HHIQPTLLGC GLIADETLYT FIWLLQSWCL AMGGKSPSVL LSDQNEAIKA 300 AVQMVFSETR HFFHLWHVLE KIPRQLDYLN IWHETFVGKL NKCVYRSWIE QQFEKRWWKL 360 IQKFNLQEHE WILSLYKDRK LWAPAFMKDV SFAGLSAASR SESLNSFFDK YINAETSLRD 420 FIGNYKSILE DRYEEEAKSN FDAWHETPEL KSPSPFEKQM LLVYSHEIFK KFQTEVLGAA 480 ACHLKREKED GSTVVYGVKD FENNQDFVVE WNELKLDVHC SCRSFQYKGY LCRHGIVVLQ 540 MSGVFIIPFK YILQRWTNAA TSRIPLSEKL DEVQAKVRRY NDLCRRAIIL GEEGSLSQDS 600 YNTAGGTINE ALKQCADVNK PSESDLRPEI SAPLAIQGAS GVNHNVGVNK VTSVNKGSKK 660 TNSGKEPVKN GGITSRKGKV PLEPQIANVG TRGIFQHMDM PGPLEYNSLY PRFLTTLLKG 720 GGEMSKRSVD MLGEMLEEKS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I01028.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856303.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Refseq | XP_012856304.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Refseq | XP_012856305.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A022Q4D2 | 0.0 | A0A022Q4D2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I01028.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I01028.4.p |
Publications ? help Back to Top | |||
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