PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01028.3.p
Common NameMIMGU_mgv1a002054mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 722aa    MW: 82810.2 Da    PI: 8.6792
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01028.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1834.9e-261197191
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                      ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p
  Migut.I01028.3.p 11 EYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPTGKWHIHSFVKEHNHELLP 97
                      69***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-241197IPR004330FAR1 DNA binding domain
PfamPF105512.2E-23208301IPR018289MULE transposase domain
PROSITE profilePS5096610.151486524IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-7497522IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-7499526IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MEFDTHEAAY EYYKEYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGN KQQSDDAINP  60
RPSPKIGCKA SMHVKRKPTG KWHIHSFVKE HNHELLPDQA HFFRSHRNLD SVNNSDARVK  120
KKKVLKKYGA YQFSGTSIEN VIRSQHDRGR FLSLEEGGAQ SILEFCSQMH EENPKFFYAL  180
DFNEEHRLRN VFWVDAKGVD DFTHFGDVVS FDTTYFQSKY RIPLVLFIGV NHHIQPTLLG  240
CGLIADETLY TFIWLLQSWC LAMGGKSPSV LLSDQNEAIK AAVQMVFSET RHFFHLWHVL  300
EKIPRQLDYL NIWHETFVGK LNKCVYRSWI EQQFEKRWWK LIQKFNLQEH EWILSLYKDR  360
KLWAPAFMKD VSFAGLSAAS RSESLNSFFD KYINAETSLR DFIGNYKSIL EDRYEEEAKS  420
NFDAWHETPE LKSPSPFEKQ MLLVYSHEIF KKFQTEVLGA AACHLKREKE DGSTVVYGVK  480
DFENNQDFVV EWNELKLDVH CSCRSFQYKG YLCRHGIVVL QMSGVFIIPF KYILQRWTNA  540
ATSRIPLSEK LDEVQAKVRR YNDLCRRAII LGEEGSLSQD SYNTAGGTIN EALKQCADVN  600
KPSESDLRPE ISAPLAIQGA SGVNHNVGVN KVTSVNKGSK KTNSGKEPVK NGGITSRKGK  660
VPLEPQIANV GTRGIFQHMD MPGPLEYNSL YPRFLTTLLK GGGEMSKRSV DMLGEMLEEK  720
S*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01028.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856303.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_012856304.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_012856305.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A022Q4D20.0A0A022Q4D2_ERYGU; Uncharacterized protein
STRINGMigut.I01028.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]