PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I01028.1.p
Common NameMIMGU_mgv1a002054mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 741aa    MW: 84701.2 Da    PI: 8.2824
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I01028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1835.1e-2630116191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       ++Y+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p
  Migut.I01028.1.p  30 EYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPTGKWHIHSFVKEHNHELLP 116
                       69***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-2430116IPR004330FAR1 DNA binding domain
PfamPF105512.3E-23227320IPR018289MULE transposase domain
PROSITE profilePS5096610.151505543IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-7516541IPR007527Zinc finger, SWIM-type
SMARTSM005755.2E-7518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MEAASTSAPS ISSLEPTDDM EFDTHEAAYE YYKEYAKSVG FGTAKLSSRR SRASKEFIDA  60
KFSCIRYGNK QQSDDAINPR PSPKIGCKAS MHVKRKPTGK WHIHSFVKEH NHELLPDQAH  120
FFRSHRNLDS VNNSDARVKK KKVLKKYGAY QFSGTSIENV IRSQHDRGRF LSLEEGGAQS  180
ILEFCSQMHE ENPKFFYALD FNEEHRLRNV FWVDAKGVDD FTHFGDVVSF DTTYFQSKYR  240
IPLVLFIGVN HHIQPTLLGC GLIADETLYT FIWLLQSWCL AMGGKSPSVL LSDQNEAIKA  300
AVQMVFSETR HFFHLWHVLE KIPRQLDYLN IWHETFVGKL NKCVYRSWIE QQFEKRWWKL  360
IQKFNLQEHE WILSLYKDRK LWAPAFMKDV SFAGLSAASR SESLNSFFDK YINAETSLRD  420
FIGNYKSILE DRYEEEAKSN FDAWHETPEL KSPSPFEKQM LLVYSHEIFK KFQTEVLGAA  480
ACHLKREKED GSTVVYGVKD FENNQDFVVE WNELKLDVHC SCRSFQYKGY LCRHGIVVLQ  540
MSGVFIIPFK YILQRWTNAA TSRIPLSEKL DEVQAKVRRY NDLCRRAIIL GEEGSLSQDS  600
YNTAGGTINE ALKQCADVNK PSESDLRPEI SAPLAIQGAS GVNHNVGVNK VTSVNKGSKK  660
TNSGKEPVKN GGITSRKGKV PLEPQIANVG TRGIFQHMDM PGPLEYNSLY PRFLTTLLKG  720
GGEMSKRSVD MLGEMLEEKS *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I01028.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856303.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_012856304.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
RefseqXP_012856305.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 4-like
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A022Q4D20.0A0A022Q4D2_ERYGU; Uncharacterized protein
STRINGMigut.I01028.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]