PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00940.1.p | ||||||||
Common Name | LOC105975457, MIMGU_mgv1a020382mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 743aa MW: 83306 Da PI: 6.5983 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 83 | 138 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r +L+k+lgL rqVk+WFqNrR++ k Migut.I00940.1.p 83 RKKYHRHTPEQITEMEALFKESPHPDENQRLQLSKQLGLHPRQVKFWFQNRRTQIK 138 7999************************************************9877 PP | |||||||
2 | START | 183.1 | 1.5e-57 | 262 | 481 | 5 | 206 |
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a++el+k+a+ +ep+Wv s+ e++n+de++++f ++ +s+ea+++s++ + +l lv++++d + +W+e ++ +a+t+ Migut.I00940.1.p 262 SALNELIKMATHREPLWVPSYetgrEILNYDEYTKQFGNENYynkmqpnKSIEASKDSAIIFVDLLWLVRSFMDAN-RWQELFPclisSASTV 353 6899*********************************76666**********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 +vi++g ga++lm+ae q+l+p+v+ R+ +f R++++ + +w+ivdvS+d+++ ++s+ +++++pSg++ie+ksngh+kvtwve Migut.I00940.1.p 354 DVICNGegengdGAVHLMFAEIQMLTPMVAtREMYFFRHCKKVSTYQWAIVDVSIDEDNI---DASSQKCRKRPSGCIIEDKSNGHCKVTWVE 443 ********************************************************9988...56899999********************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+++++ +h+l+rs+v++gla+ga++w tlq+qce+ Migut.I00940.1.p 444 HIECQKIPIHSLYRSIVNKGLAFGARHWICTLQQQCER 481 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 73 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.92E-20 | 76 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-19 | 82 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-18 | 83 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.50E-16 | 87 | 138 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.86 | 249 | 484 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-30 | 256 | 481 | No hit | No description |
SMART | SM00234 | 4.3E-50 | 258 | 481 | IPR002913 | START domain |
CDD | cd08875 | 1.44E-92 | 261 | 480 | No hit | No description |
Pfam | PF01852 | 5.0E-45 | 262 | 481 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.7E-4 | 307 | 479 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.3E-9 | 530 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence Send to blast |
MSKLRRAFLP SPALSLSLAG IFQDGRSTAA SGEVETVEIS SENSGAGKYR SDEEEEEKHI 60 IDECDDDDEN CINGGEKKTK KKRKKYHRHT PEQITEMEAL FKESPHPDEN QRLQLSKQLG 120 LHPRQVKFWF QNRRTQIKAI QERHENSVLK TEMDKLRDEN KVLRETLKSP SCPNCGFATT 180 SGKESITAAT DEQRLRIENA TLKTEVEKLR SIIGKSSQGT SPNTSSCSPP GNINDQENRS 240 SFDFNTGNIG LERLRVKDTV KSALNELIKM ATHREPLWVP SYETGREILN YDEYTKQFGN 300 ENYYNKMQPN KSIEASKDSA IIFVDLLWLV RSFMDANRWQ ELFPCLISSA STVDVICNGE 360 GENGDGAVHL MFAEIQMLTP MVATREMYFF RHCKKVSTYQ WAIVDVSIDE DNIDASSQKC 420 RKRPSGCIIE DKSNGHCKVT WVEHIECQKI PIHSLYRSIV NKGLAFGARH WICTLQQQCE 480 RLVFHVATNV PVKDSSGVDT LAGRKSILTL SQRMSWSFCR AIGGSRRILW KKIVSKTGDD 540 IRVSLRNNLN EQGEPIGTIL SAVSSVWLPL SHHALFDFLR DENRRNEWDI MSNGSTVHST 600 VNLAKGQDRG NAVTVMDMKG EEQSVLVLQD SCTNAYESMV VYAPVDIKGL QSVMTGCDSS 660 KIPVLPSGFA IISDGIESRP FVFTSTRQDE KSTDGGSLLT VAFQILISNA TSAELSMDSV 720 DSVNTLISCT LQNIKRSLHC ED* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | KKTKKKRKK |
2 | 80 | 84 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00940.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ197360 | 0.0 | HQ197360.1 Mimulus guttatus pop-variant IM62 GLABRA2 (GL2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856110.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A022Q2R3 | 0.0 | A0A022Q2R3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6228 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00940.1.p |
Entrez Gene | 105975457 |
Publications ? help Back to Top | |||
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