PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00908.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 339aa MW: 36598.4 Da PI: 6.6337 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52 | 9.4e-17 | 225 | 259 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Migut.I00908.1.p 225 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 259 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.9E-79 | 14 | 314 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.2E-16 | 219 | 269 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.479 | 219 | 255 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.0E-14 | 220 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 8.55E-15 | 221 | 282 | No hit | No description |
CDD | cd00202 | 1.10E-12 | 224 | 271 | No hit | No description |
Pfam | PF00320 | 1.3E-14 | 225 | 259 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 225 | 250 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEYLAGDYAE FSSVDNGNFN HSSNGGGGVH FIVDDLLDFS KADETMTDAF FDTLAGNSGD 60 SSTVTAVDSC NSSVSGGGDG QFNGDVSCRS FNDTQFSGNE LCVPYDDLAE LEWLSNFVEE 120 SFSTDDLHFI PATNAAAAAA AAAATKAVAA DASSSVITTN SPPQPIFPTE VSVPGKARSK 180 RSRAAPCDWS SRLLLLSPSS NPQAAPPPQQ QHKKREPSET PGRRCLHCAS EKTPQWRTGP 240 MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FISARHSNSH RKVLELRRQK EVQVVHHHKQ 300 HHHPQLISHH QPSIFNGCDE FLIHHHGSIN GPDLRHMI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00908.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856815.1 | 0.0 | PREDICTED: GATA transcription factor 12-like | ||||
Swissprot | O82632 | 4e-76 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A022Q2T1 | 0.0 | A0A022Q2T1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I00908.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 9e-67 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00908.1.p |
Publications ? help Back to Top | |||
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