PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00749.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 727aa    MW: 83750.4 Da    PI: 5.2713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00749.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1661e-20129213189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                       ++Yn YAke+GF +r+++s ++++++e   + ++C++eg++++++ +     ++r+etrtgC+a++++++ + +++w++++++ eHnH +
  Migut.I00749.1.p 129 NYYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAS-----TQRKETRTGCQAMIRLRLVEsSNRWRLDEVKIEHNHLF 213
                       69***************************************998777.....999***************999***************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-18129212IPR004330FAR1 DNA binding domain
PfamPF105515.8E-25329422IPR018289MULE transposase domain
PROSITE profilePS509668.926608644IPR007527Zinc finger, SWIM-type
PfamPF044345.3E-5618642IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-5619646IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MADDAVFSPA GEGLSPNSGI EISMEEEGSG NSEELLDDEG EEDFEIETDA LTNEDNQILE  60
VKSDNLENAI HQALIVQRTD LENECEHVLD IYANNNGNIA GAQTDHTEGK SYIPPVVGME  120
FESYEDAYNY YNCYAKELGF GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT TKEASTQRKE  180
TRTGCQAMIR LRLVESSNRW RLDEVKIEHN HLFDHEKAQN SRSHKKTEAG TKRKLESAVE  240
VEIQTIKLFR TPVSYGSSSE REPNNNLDPM KRIKFGNGDI LALYDYFRRS QLTDPNFFYI  300
MDLSDEGYLR NVFWIDSRSR AAYSYFGDVV VVDTTCVSNK YDVPLLSFSG LNHHGESLLL  360
GCCLLVDETL ETYIWLMRAW LTCLSGRAPQ TIITDRCKFL QGAIYEVLPR SNHRLCLPHV  420
MRSIQENLEV RESEMFGKVL DRTVYASMKV EEFETRWEEM VQRFAVKDHD WLRNLYEDRE  480
KWVPVYSKNT PGGIFTGEYI NPFFHGYLHE RMTWSEFFNV HELLLQKKIH KEALDDFESR  540
EFMPVLQTRC NYELQASQLY SKGIFSKFLE EIVLMCNCFG VAQIHTNGAI VTYVVKERDA  600
DVAEVKNFEV VYDKVGAEVR CVCGCFNFRG YLCRHALSVL SCNGVEEIPS QYILTRWRKD  660
VKRIYSHDFD SNGIDVSNPV QRYDHLYRRA MQVVAEGMGS KDHHMVAWQA FKESLNKVRL  720
AAEKPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00749.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856500.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A022Q5790.0A0A022Q579_ERYGU; Uncharacterized protein
STRINGMigut.I00749.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8