PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00628.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 340aa    MW: 38280 Da    PI: 6.6083
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00628.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.45.5e-1151106255
               AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Migut.I00628.1.p  51 IHRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEAAAAHAYDLAALKYWG 106
                       68******************99998898888888*****99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1450116IPR016177DNA-binding domain
PROSITE profilePS5103217.74151114IPR001471AP2/ERF domain
SMARTSM003803.2E-1851120IPR001471AP2/ERF domain
PfamPF008473.7E-751106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1152115IPR001471AP2/ERF domain
PRINTSPR003672.6E-55263IPR001471AP2/ERF domain
PROSITE profilePS510329.69132191IPR001471AP2/ERF domain
SMARTSM003808.3E-5150197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-6165192IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-5165193IPR016177DNA-binding domain
PRINTSPR003672.6E-5173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVRSSRPKKN SDVVADITVK NNNNNNNKNT AKAKRTRKSS PRQSPQQRSS IHRGVTRHRW  60
TGRYEAHLWD KNCWNESQNK KGRQGAYDDE AAAAHAYDLA ALKYWGQDTI LNFPLSTYQK  120
ELMEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARYYFQ HPIQSTQEEA ATAYDMAAIE  180
YRGLNAVTNF DLSRYVKWLR PLENNPDNFE NIPNGDTEVS TTIQDPGQQL GLDLLDQHRE  240
SPSPTETTEI SAYPSGANAT SALGILLQSS KFKEMLKQTA TCSNSSSNSE PDPPKSSFPD  300
HIQTSFDIQD SSSFVEEHDI VFGDYDSFAS SMFHCELDT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00628.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-147AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-147AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN42e-82AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9731e-138A0A2K2B973_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-64ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]