PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00613.2.p | ||||||||
Common Name | LOC105975799, MIMGU_mgv1a001371mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ARF | ||||||||
Protein Properties | Length: 774aa MW: 86216.8 Da PI: 6.5178 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.5e-24 | 143 | 244 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + Migut.I00613.2.p 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RG 232 99*****************************7333.34459************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+v+r+ Migut.I00613.2.p 233 ENGELRVGVRRA 244 9999*****996 PP | |||||||
2 | Auxin_resp | 120 | 1.9e-39 | 269 | 351 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWr+Lk Migut.I00613.2.p 269 AWHAIQTKTMFTVYYKPRTSPAEFIVSYDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDADSKRWPESKWRCLK 351 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-40 | 139 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 140 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.40E-22 | 141 | 243 | No hit | No description |
SMART | SM01019 | 2.0E-23 | 143 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 143 | 245 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-21 | 143 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.8E-37 | 269 | 351 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.9E-6 | 689 | 773 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 19.289 | 705 | 773 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.96E-8 | 706 | 773 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 774 aa Download sequence Send to blast |
MAASEVSIKG YSDANDCNSG TDKANSGAGK VDTETALYTE LWRACAGPLV TVPRENELVF 60 YFPQGHMEQV EASTNQSADQ QMPVYNLPPK ILCRVVNVNL KAEPDTDEVF AQVTLMPEPN 120 QDENAAKKEP LPSPPPCFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT 180 QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG 240 VRRAMRQQGN APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA EFIVSYDQYM 300 ESVKNNYSIG MRFKMRFEGE EAPEQRFTGT IVGTEDADSK RWPESKWRCL KVRWDETSTI 360 PRPERVSPWK IEPALSPPAL NPLPVPRPKR PRSSVLPSSP DSSVLTREGP SKMTVDPSPA 420 NGFQRVLQGQ ELSTLRGTFA ESNESEASEK PLLWNPSLDE DKIDALSASK RYMPDKWLPI 480 GRPESSFTDL LSGFGSQISG SRDFCMPPGD EAVSKRQRQD QQHEAKFSFI GNNNNWSIMP 540 SGLSLNLMDS SQGQGTTDVR YGGGFREYSL MPDSRGGDNQ QRNWLMPPPI SPYLQMGPAQ 600 PRELMPKSAF MQQQPSHDSM KPKEGNCKLF GIPLRSSSNS ASLDQTLSQR TAMIERASHM 660 QLGLHSHQSP AIESDQSKGS KMVDSPVATS EQDKPVTKVH SGSTRSCTKV HKQGTALGRS 720 VDLAKFDNYD ELIAELDNLF EFNGELKAKT KNWLVVYTDD EDDMMLVGDD PWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 36 | 373 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 36 | 373 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 36 | 373 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor (PubMed:26959229, PubMed:26716451, PubMed:27645097, PubMed:28167023). Involved in the control of fruit ripening process (PubMed:26959229, PubMed:26716451, PubMed:28167023). Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26959229, PubMed:26716451). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). Regulates vegetative growth, lateral root formation and flower organ senescence, possibly partially by regulating gene expression of auxin and ethylene response factor (ERF) genes (PubMed:28167023). Plays a negative role in axillary shoot meristem formation (PubMed:27645097). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00613.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression in tomato fruits is up-regulated by exogenous application of ethylene and down-regulated by inhibition of ethylene receptors with 1-methylcyclopropene (1-MCP) (PubMed:26959229, PubMed:26716451). Up-regulated by plant hormone abscisic acid (ABA) in tomato fruits (PubMed:26959229). Expression is not up-regulated by plant hormone auxin in tomato fruits (PubMed:26716451). Up-regulated by auxin and gibberellic acid (GA), and down-regulated by ethylene in seedlings (PubMed:28167023). Down-regulated during decapitation-induced axillary shoot development and by excision of immature leaves. Down-regulation is inhibited by the application of auxin on the cut surface (PubMed:27645097). {ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229, ECO:0000269|PubMed:27645097, ECO:0000269|PubMed:28167023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856487.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q2LAJ3 | 0.0 | ARF2A_SOLLC; Auxin response factor 2A | ||||
TrEMBL | A0A022Q1X6 | 0.0 | A0A022Q1X6_ERYGU; Auxin response factor | ||||
TrEMBL | A0A022Q5K7 | 0.0 | A0A022Q5K7_ERYGU; Auxin response factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00613.2.p |
Entrez Gene | 105975799 |
Publications ? help Back to Top | |||
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