PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00404.1.p | ||||||||
Common Name | MIMGU_mgv1a006823mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 256aa MW: 29351.9 Da PI: 11.5542 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.7 | 1.3e-22 | 83 | 130 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+++ r+vtfskRr+g++KKA ELSvLC++++a+iifs g+ y + Migut.I00404.1.p 83 LISDENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 130 699*************************************99999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.058 | 74 | 134 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.6E-31 | 74 | 133 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.58E-30 | 75 | 143 | No hit | No description |
SuperFamily | SSF55455 | 1.05E-26 | 75 | 149 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 76 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 84 | 130 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 96 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 111 | 132 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVITTRIRGS NCLAIFNAPK NPYLIRVFGV SFLPTIPQSF NLPRYLRQSF LKFLNFNWIS 60 SAHMAPPQGR KKSQGRRKIE MKLISDENAR TVTFSKRRAG LFKKATELSV LCGTQIALII 120 FSLGGRAYSF GNPSVGSVLD RFRSKNRNPN VQDSVHATRI RSATLQQLKE QCDQKNKELE 180 IRKIRGKEIE ATLEGSSCQI SEEQLNLLDF DQLKQLKEKM ENLRDNLRRG LTNRPRTGSN 240 KHSRSRLDFI RRRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-14 | 59 | 146 | 1 | 88 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-14 | 59 | 146 | 1 | 88 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00404.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827635.1 | 0.0 | PREDICTED: uncharacterized protein LOC105948920 | ||||
TrEMBL | A0A022PXS4 | 1e-180 | A0A022PXS4_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15656 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-31 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00404.1.p |