PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00351.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 241aa    MW: 27934.5 Da    PI: 6.6817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00351.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-151196191
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                      ff++l+++d ++s  + +p  f ++h+++   +  ++l+  sg++W+vk+  +  +g+y++tkGW++F+++ +L+  Df+ F++d++s+f 
  Migut.I00351.1.p 11 FFQILIHNDFTRS--VKVPLAFGQKHKNI--LTENMRLRIGSGETWDVKV-EQADDGHYYFTKGWEDFARDLKLERSDFIGFTFDDNSTFD 96
                      7888877777766..799********888..5557***************.3555555*************************99988884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-205105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-205105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.6889103IPR003340B3 DNA binding domain
CDDcd100175.51E-13998No hitNo description
PfamPF023621.7E-121196IPR003340B3 DNA binding domain
SMARTSM010195.7E-811103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-6139237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-7139231IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.217139240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MERKSTTKPS FFQILIHNDF TRSVKVPLAF GQKHKNILTE NMRLRIGSGE TWDVKVEQAD  60
DGHYYFTKGW EDFARDLKLE RSDFIGFTFD DNSTFDVTAW GSDGCGKEYS FPHPYVVVDD  120
DSSEDELLEQ QEEETNVINP KFAIVLQRSH ISRVSICKNY AEEAGLIGKK RVVLEYQPGG  180
YCSSVVLDFR SPNMRLNKNG FRLDFAKGWR DFRKATGMRF YRTYLFEFIP WKGVIQVKEV  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00351.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855415.11e-129PREDICTED: B3 domain-containing protein At3g17010-like
TrEMBLA0A022RZN21e-160A0A022RZN2_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.17e-11B3 family protein