PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.I00190.1.p
Common NameLOC105959762, MIMGU_mgv1a007692mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 361aa    MW: 41501.9 Da    PI: 6.3552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.I00190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.2e-211053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk
  Migut.I00190.1.p 10 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 53
                      678999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.619161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171255IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRVKLKIQR LESLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ  60
RSNIDEMITK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDTS TPSIEEMQNR  120
LRMLQSQLAE LHKRISWWAN PDKIEDIEHL NQMENSLRET LNRTRMHKEE KFLKDTHIPF  180
DCTNQFQTGM QFPIATTSDQ GCGNQSWLPG GDSQHMILPN EPHFLTTRDM ECTRDASFPT  240
CSGYFGDLKE HINIDNSREL KNDRHDGITI DDYTYSASLR LPIPDQYQYH SFGNLSFPEL  300
MVDPTKEANF QPGAMEYQIN SNFELRGSVV YNNFPHGLVP SAGSCAISML NENSYPQPPN  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14192190MEF2 CHIMERA
6byy_B1e-14192190MEF2 CHIMERA
6byy_C1e-14192190MEF2 CHIMERA
6byy_D1e-14192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.I00190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839362.10.0PREDICTED: agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ7X9I03e-82AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A022R6G60.0A0A022R6G6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-84AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]