PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02486.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | GATA | ||||||||
Protein Properties | Length: 232aa MW: 24870 Da PI: 10.3651 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.6 | 9.5e-20 | 162 | 196 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l Migut.H02486.1.p 162 CSHCGVTKTPQWRAGPLGRKTLCNACGVRFKSGRL 196 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 8.2E-70 | 5 | 231 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.202 | 156 | 192 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-15 | 156 | 210 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-15 | 157 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.4E-15 | 160 | 194 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.00E-13 | 161 | 209 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 162 | 187 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-17 | 162 | 196 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
APPPPPPENG ALSPELSVQA AEGLESLEWL SHFVEESFSD YPLTGKFPHN PTAARSEPPQ 60 AAAAKEQPCF TTPVQTKART KRARTGVRVW PVLSPSSFAE TSAASSSSSS SSTSFSPPAL 120 YFIQTETGDS SLRKPPAAKK RKSKPADVSG GGGAGQQQPR RCSHCGVTKT PQWRAGPLGR 180 KTLCNACGVR FKSGRLLPEY RPACSPTFST DLHSNSHRKV LEMRRKKELE N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02486.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844956.1 | 1e-165 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 8e-60 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A022QX95 | 1e-124 | A0A022QX95_ERYGU; GATA transcription factor | ||||
STRING | Migut.H02486.1.p | 1e-166 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-40 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02486.1.p |