PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02389.1.p
Common NameMIMGU_mgv1a026157mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9075.66 Da    PI: 10.4861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.1e-20858151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie+ ++ qvtfskRr  ++KKA+E+ v Cd++va + fs++g++  +s+
  Migut.H02389.1.p  8 KKIEDVTKCQVTFSKRRSSLMKKANEIAVCCDIDVAFVAFSPSGRVSKFSN 58
                      68*********************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.081160IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-20159IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-16222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23377IPR002100Transcription factor, MADS-box
PfamPF003194.5E-20956IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-162237IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MGRKIDMKKI EDVTKCQVTF SKRRSSLMKK ANEIAVCCDI DVAFVAFSPS GRVSKFSNQK  60
RIEDVLHRYV NLPPESRLK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02389.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630259.15e-40PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_012853311.11e-38PREDICTED: MADS-box transcription factor 25-like
SwissprotQ9LM467e-24AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A022QWZ73e-50A0A022QWZ7_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-26AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]