PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02287.1.p
Common NameMIMGU_mgv1a004687mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 519aa    MW: 57214.4 Da    PI: 6.5785
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.1e-14234293155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e Aa a++ a++k++g
  Migut.H02287.1.p 234 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEERAAHAYDLAALKYWG 293
                       57*******************666664478446*************************98 PP
2AP249.88.3e-16336387155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Migut.H02287.1.p 336 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387
                       57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-11234293IPR001471AP2/ERF domain
CDDcd000183.78E-20234303No hitNo description
SuperFamilySSF541715.36E-17234303IPR016177DNA-binding domain
PROSITE profilePS5103219.019235301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-16235302IPR001471AP2/ERF domain
SMARTSM003805.8E-28235307IPR001471AP2/ERF domain
PRINTSPR003674.3E-6236247IPR001471AP2/ERF domain
PfamPF008473.5E-10336387IPR001471AP2/ERF domain
CDDcd000187.45E-11336395No hitNo description
SuperFamilySSF541719.15E-18336396IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-18337395IPR001471AP2/ERF domain
SMARTSM003807.9E-31337401IPR001471AP2/ERF domain
PROSITE profilePS5103219.111337395IPR001471AP2/ERF domain
PRINTSPR003674.3E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAPENNWLSF SLSSMEMLNS SPSSSSQTHE QAAAHHYYSF ADNFYATTGW PNQKAEEAMY  60
AEAENHHHHQ AKEHNDDASI IFNTYMHAPP KLEDFFADST ETQDSSLTHI YDHHHQHQGI  120
ASGGGGAAYF GNGEQQDLKT VVGFQAFSAN SGSEVDDSAF AAQTRSPVES AAELVPYSHC  180
YPITDNNNNN TANNNNNNSL CVEVNGNNNK TTAIVAADRQ SGKKISDTFG QRTSIYRGVT  240
RHRWTGRYEA HLWDNSCRRE GQARKGRQVY LGGYDKEERA AHAYDLAALK YWGSTATTNF  300
PMSSYSKEVD EMQNMTKQEF IASIRRKSSG FSRGASIYRG VTRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGINA VTNFEMNRYD VEAIANSALP IGGNSAKRLK  420
VEEKLPLTIT AATTTTTTPA PFQSPYTSNN INFAAGPMIP YGVPYDNSAP FYHHNLFHQY  480
CSNPAATATT GAPASLLTSS SSSSQSPGEF FIWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02287.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845349.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N81e-144AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A022QTN90.0A0A022QTN9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-126AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]