PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02250.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 275aa    MW: 30971.1 Da    PI: 8.7518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-184488147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rW++eE+e++++a k++G + W++I +++g ++t+ q++s+ qk+
  Migut.H02250.1.p 44 RERWSEEEHERFLEALKLYGRK-WRKIEEHVG-TKTAVQIRSHAQKF 88
                      78******************99.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-173893IPR009057Homeodomain-like
PROSITE profilePS5129422.7223993IPR017930Myb domain
TIGRFAMsTIGR015573.2E-174291IPR006447Myb domain, plants
SMARTSM007171.1E-134391IPR001005SANT/Myb domain
PfamPF002496.8E-154487IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-104484IPR009057Homeodomain-like
CDDcd001672.20E-114689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLIIGKKPSE IIMIDNMKPK NILKSDRYYE TDEARKPYTI TKQRERWSEE EHERFLEALK  60
LYGRKWRKIE EHVGTKTAVQ IRSHAQKFFS KVDNSIEIPP PRPKKKPTNP YPRKTVSIIE  120
KPKSMVSADS SVFEQENRSP TSVLSASDSV HNEDVVPPKL DIVQEGPKEE LAANIQCLKL  180
FGKTLLVTPD FSNGNVPINA CNNNNNNIGN DFFNPHTMSD GTNQIMYSST CSLVPMPWLT  240
FYDAGPLSTR ELHNPKPVKA QPNEGSSSSG SNID*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02250.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844889.11e-148PREDICTED: protein REVEILLE 2-like
SwissprotF4K5X66e-43RVE2_ARATH; Protein REVEILLE 2
TrEMBLA0A022QSI11e-178A0A022QSI1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-38MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]