PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H02206.1.p | ||||||||
Common Name | LOC105965319, MIMGU_mgv1a011688mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 275aa MW: 30603.9 Da PI: 4.911 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps++++++++++l +++e++V++WFqNrRa+ k+ Migut.H02206.1.p 90 RQRWTPTPMQLQILERIFDQgVGTPSKQKIKDITTELsqhgQISETNVYNWFQNRRARSKR 150 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.3 | 8.2e-34 | 90 | 152 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Migut.H02206.1.p 90 RQRWTPTPMQLQILERIFDQGVGTPSKQKIKDITTELSQHGQISETNVYNWFQNRRARSKRKQ 152 89***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 85 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.107 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-13 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-17 | 88 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-18 | 90 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.85E-12 | 90 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MMEWEKQPPQ QAEEPSGGGG GGGGGMYVKV MTDEQMEVLR KQIAVYATIC EQLVELHKTL 60 TSQNDLSGVR LGNLYCDPLM TSGAHKITGR QRWTPTPMQL QILERIFDQG VGTPSKQKIK 120 DITTELSQHG QISETNVYNW FQNRRARSKR KQHAPQSNNN NNGESEVETE VESSNEKKTN 180 TDESFQPQNI LSSNSEDLCF QNPQSSSAVD PRTSKAEPTL PQEVSSKFGG GFGQMPSFYG 240 SMLPNSRMEQ FIGKIEVPGN YNPYLQQDDY NIDG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 143 | 151 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H02206.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012845314.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-85 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A022QQ64 | 0.0 | A0A022QQ64_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-79 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H02206.1.p |
Entrez Gene | 105965319 |
Publications ? help Back to Top | |||
---|---|---|---|
|