PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02193.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 310aa    MW: 35038.4 Da    PI: 9.9495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-1521104998
                       HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +    + l +p++f++++   +  ++s  ++l+ ++   W+v+l  ++ +g+++l++GWkeFv+   +k g  +vF+++g  +f+++v vf+
  Migut.H02193.1.p  21 SD---HKLKIPREFVKRYgnTLLRNCS-VISLKVPTDSLWRVEL--TRADGEIWLQNGWKEFVEFYSIKFGHLLVFEYQG--SFQFRVLVFD 104
                       44...4577*********774444465.99**************..*******************************987..6666999887 PP
2B364.12.2e-20212306198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f++ + ps+v + + l++p + a+ + ++ + ++ l+l+ ++g++W vk+  + ++ +  + +GW++Fvk+n+Lk+gD+++F+++++++  l 
  Migut.H02193.1.p 212 FISLMHPSSVIRADDLSIPLSIAKGNLSD-AMTRNLKLRVLNGKTWPVKC--TIYKLSAKINSGWRNFVKDNRLKVGDVCIFQVINTTRLLLE 301
                       788899*****************999433.45668***************..77777788***********************9999999899 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v++fr
  Migut.H02193.1.p 302 VTIFR 306
                       99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-198105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-2010118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5210106IPR003340B3 DNA binding domain
CDDcd100171.30E-1611104No hitNo description
SMARTSM010195.8E-1213106IPR003340B3 DNA binding domain
PfamPF023627.8E-1214104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21207306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-20207306IPR015300DNA-binding pseudobarrel domain
CDDcd100174.43E-21210306No hitNo description
SMARTSM010191.5E-14212308IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508212308IPR003340B3 DNA binding domain
PfamPF023628.1E-19212306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MATNCFSKKD PKFMKIVLNP SDHKLKIPRE FVKRYGNTLL RNCSVISLKV PTDSLWRVEL  60
TRADGEIWLQ NGWKEFVEFY SIKFGHLLVF EYQGSFQFRV LVFDMTASEI EYPSQCASNS  120
GIGSKSSDSF VSSEQILTKT KGKGKRKIQD ELGSDENECD ASVDIIGSTS GCDSNDSKES  180
WRGKTALKKK TSAAYEMAKR YKDNNPSTMP YFISLMHPSS VIRADDLSIP LSIAKGNLSD  240
AMTRNLKLRV LNGKTWPVKC TIYKLSAKIN SGWRNFVKDN RLKVGDVCIF QVINTTRLLL  300
EVTIFRCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1318030621141B3 domain-containing transcription factor VRN1
4i1k_B2e-1318030621141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722452e-96KP172245.1 Erythranthe guttata vernalization 1 (VRN1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844991.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A022QWA61e-122A0A022QWA6_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-37B3 family protein