PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02166.1.p | ||||||||
Common Name | LOC105965031, MIMGU_mgv1a018173mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | WOX | ||||||||
Protein Properties | Length: 305aa MW: 33930.4 Da PI: 7.768 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.4e-20 | 33 | 94 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t+eq+++L+el+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ Migut.H02166.1.p 33 STRWTPTTEQIRILKELYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 94 58****************98678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115 | 3.6e-37 | 32 | 96 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt+eQi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Migut.H02166.1.p 32 SSTRWTPTTEQIRILKELYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 96 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 13 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-12 | 20 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.754 | 29 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-6 | 31 | 99 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.18E-7 | 34 | 96 | No hit | No description |
Pfam | PF00046 | 9.7E-18 | 34 | 94 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAEAHEENGV QGNGNEEGGG KSNNSSYMCR QSSTRWTPTT EQIRILKELY YNNGVRSPTA 60 EQIQRISAKL RQYGKIEGKN VFYWFQNHKA RERQKKRFTS DHQIIPTSTM HHHVSRPGNN 120 TWKTTHQDHL YTKFSSNPPP PAAGGNFPSS STSSTPGFLG SAHVGNYGSV AMEKSFRECS 180 INNQSGGGSV NGGTMGQSFA WIGVDNPYPY PHPYPYPHPF LEKRKLYGQA LDSMEMEMEE 240 QQIETLPLFP MHGDDLVKHD FNGWRRRPQA DDDDSSAVAG PMASLELTLN SYAAAASCTR 300 FSTS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02166.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-42 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844995.1 | 0.0 | PREDICTED: protein WUSCHEL | ||||
Swissprot | Q6YBV1 | 5e-84 | WUS_ANTMA; Protein WUSCHEL | ||||
TrEMBL | A0A022QU09 | 0.0 | A0A022QU09_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-43 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02166.1.p |
Entrez Gene | 105965031 |