PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02166.1.p
Common NameLOC105965031, MIMGU_mgv1a018173mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WOX
Protein Properties Length: 305aa    MW: 33930.4 Da    PI: 7.768
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.4e-203394257
                      T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+t+t+eq+++L+el+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Migut.H02166.1.p 33 STRWTPTTEQIRILKELYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 94
                      58****************98678*************************************97 PP

2Wus_type_Homeobox1153.6e-373296265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
   Migut.H02166.1.p 32 SSTRWTPTTEQIRILKELYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 96
                       789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-81394IPR009057Homeodomain-like
SuperFamilySSF466894.71E-122096IPR009057Homeodomain-like
PROSITE profilePS5007110.7542995IPR001356Homeobox domain
SMARTSM003898.8E-63199IPR001356Homeobox domain
CDDcd000862.18E-73496No hitNo description
PfamPF000469.7E-183494IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEAHEENGV QGNGNEEGGG KSNNSSYMCR QSSTRWTPTT EQIRILKELY YNNGVRSPTA  60
EQIQRISAKL RQYGKIEGKN VFYWFQNHKA RERQKKRFTS DHQIIPTSTM HHHVSRPGNN  120
TWKTTHQDHL YTKFSSNPPP PAAGGNFPSS STSSTPGFLG SAHVGNYGSV AMEKSFRECS  180
INNQSGGGSV NGGTMGQSFA WIGVDNPYPY PHPYPYPHPF LEKRKLYGQA LDSMEMEMEE  240
QQIETLPLFP MHGDDLVKHD FNGWRRRPQA DDDDSSAVAG PMASLELTLN SYAAAASCTR  300
FSTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02166.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-42HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844995.10.0PREDICTED: protein WUSCHEL
SwissprotQ6YBV15e-84WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A022QU090.0A0A022QU09_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-43WOX family protein