PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01903.1.p
Common NameLOC105961978, MIMGU_mgv1a011866mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 269aa    MW: 30511.7 Da    PI: 7.8929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01903.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-14158258198
                       EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+kvl+ sd+  + +rlv+pk++ae++  +++  ++  ++++d +g++W++ ++y+   g+  yvl+ G ++   +++ + gD+v+F++++  
  Migut.H01903.1.p 158 FEKVLSESDADLKfARLVVPKRCAEAFfpDISDLRGLRIKIQDIEGNEWQFHYRYWLDCGSrvYVLE-GLRDHIVSKKWQPGDTVTFYRVE-P 248
                       899**9999988889*************9777778899*****************655555547777.********************765.6 PP

                       EE..EEEEE- CS
                B3  89 efelvvkvfr 98 
                       +++ v+++++
  Migut.H01903.1.p 249 GGKVVMGLRK 258
                       6666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-21154264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16155262IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-19156258No hitNo description
PfamPF023624.1E-11158257IPR003340B3 DNA binding domain
SMARTSM010194.3E-15158260IPR003340B3 DNA binding domain
PROSITE profilePS508638.614159260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASSSRMPSC FHCHSSSSST PDHFRNGWRL RSGHHAQLCP PCASLYEEGR FCEAFHKNDP  60
GWRDCNSCGK MVHCGCIVSF NNHLILDCGG INCMECSRLN FLLERNRCIS LEPEIRAKES  120
YQESFSQAPV DSQYCPRVTD AELQQVSRNP KATVTPLFEK VLSESDADLK FARLVVPKRC  180
AEAFFPDISD LRGLRIKIQD IEGNEWQFHY RYWLDCGSRV YVLEGLRDHI VSKKWQPGDT  240
VTFYRVEPGG KVVMGLRKTS AGPQIPRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-421362602125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01903.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841691.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like
TrEMBLA0A022QY630.0A0A022QY63_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.17e-43high-level expression of sugar-inducible gene 2