PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H01862.1.p | ||||||||
Common Name | LOC105962001, MIMGU_mgv1a013092mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25401.8 Da PI: 8.6806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.5e-11 | 80 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL +l + + +K +K++iL A + + +L Migut.H01862.1.p 80 TKACREKQRRDRLNDKFMELGAILEPG---RPPKTDKSAILSDALRMVTQL 127 6789**********************8...89************9998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.316 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-9 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-8 | 80 | 132 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-12 | 80 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-12 | 81 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MVTPENTNWL YDYGFEDITV PVGNLSSPSP GFSWPVQQPL NGGSSNASVE IDGSLGESDV 60 QKETGSKKRA RTESCAPSNT KACREKQRRD RLNDKFMELG AILEPGRPPK TDKSAILSDA 120 LRMVTQLRTE AQKLKDANLN LQEKIKELKA EKNELRDEKQ RLKAEKEKVE QQLKTVNGAP 180 QPGFLPAHQA MPGGNKLVPI ISYPGVAMWQ FMPPAAVDTS QDHVLRPPVA * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H01862.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841716.1 | 1e-171 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-112 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A022QYB2 | 1e-169 | A0A022QYB2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01862.1.p | 1e-170 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-115 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H01862.1.p |
Entrez Gene | 105962001 |