PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01796.1.p | ||||||||
Common Name | LOC105962049, MIMGU_mgv1a013001mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25305.2 Da PI: 9.0189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 29 | 77 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g Migut.H01796.1.p 29 FRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 77 8*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.8E-13 | 28 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-37 | 28 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-18 | 28 | 85 | No hit | No description |
PROSITE profile | PS51032 | 23.209 | 28 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 29 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 29 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRKGRTAAAA AVQGGGEANG SGGSKEIRFR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDS 60 AEDAARAYDA AARSLRGPKA RTNFPPPPNA AVFPDFNPRN PNQPHINSNP NDPLMDSRYY 120 TQDQQLIAQQ RPTTSGMSST VESFSGPRAP PPPRPLIAQQ QRRHPRSPPV VPDDCRSDCD 180 SSSSVVDDAE CDIASSSCKK PLAFDLNMPP PPPTPMDAAA SDLDELACTA LRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 23 | 89 | 9 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01796.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841774.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 7e-59 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A022R4A6 | 1e-168 | A0A022R4A6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-28 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01796.1.p |
Entrez Gene | 105962049 |