PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01557.1.p
Common NameLOC105962246, MIMGU_mgv1a001886mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 745aa    MW: 81609 Da    PI: 5.8349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01557.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-1961116156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  q+k+WFqN+R+++k
  Migut.H01557.1.p  61 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQIKFWFQNKRTQMK 116
                       688999***********************************************998 PP
2START229.21.2e-712524721206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela +a++el+++a+++ep+W +ss    e++ ++e++++f+++ +     +++ea+r+s+vv+m++++lve+l+d+  qW++ +a    +a+
  Migut.H01557.1.p 252 ELAVAAMEELIRMAQSGEPLWISSSdssvEILSEEEYVRTFPRGIGpkplgFKSEASRESAVVIMNHVNLVEILMDVD-QWSNVFAsivsRAM 343
                       57899**************************************999********************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skvtw
  Migut.H01557.1.p 344 TLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGEGIWAVVDVSLDNLRPTS----VSRCRRRPSGCLIQELPNGYSKVTW 432
                       *************************************************************975....8************************ PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       vehv++++r++h+++++lv+sgla+gak+wvatl+rqce+
  Migut.H01557.1.p 433 VEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 472
                       **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-1944118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2145112IPR009057Homeodomain-like
PROSITE profilePS5007116.5258118IPR001356Homeobox domain
SMARTSM003891.7E-1859122IPR001356Homeobox domain
PfamPF000465.2E-1761116IPR001356Homeobox domain
CDDcd000863.10E-1861119No hitNo description
SuperFamilySSF559614.2E-40243474No hitNo description
PROSITE profilePS5084847.244243475IPR002913START domain
CDDcd088756.86E-132247471No hitNo description
SMARTSM002348.4E-73252472IPR002913START domain
PfamPF018521.3E-60253472IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4348472IPR023393START-like domain
SuperFamilySSF559614.67E-26492736No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MFQPNMFESH HHLLEMAGHK PPENNEMDHL IRDEEYESKS GTDIMEPTSG DDQDPNQRPK  60
KKRYHRHTQH QIQEMESFFK ECPHPDDKQR KELGRRLGLE PLQIKFWFQN KRTQMKSQHE  120
RHENTNLRNE NEKLRAENVR YKEALTNATC PNCGGPAAIG EMSFDEQHLR IENVRLREEI  180
DRISGIAAKY VGKPMLSYPH LSSASSRSLD LGVGSYGTQT GGNIPGENIY GAADLLRSVS  240
GPTDADKPMI IELAVAAMEE LIRMAQSGEP LWISSSDSSV EILSEEEYVR TFPRGIGPKP  300
LGFKSEASRE SAVVIMNHVN LVEILMDVDQ WSNVFASIVS RAMTLEVLST GVAGNYNGAL  360
QVMTAEFQVP SPLVPTRENY FVRYCKQHGE GIWAVVDVSL DNLRPTSVSR CRRRPSGCLI  420
QELPNGYSKV TWVEHVEVDD RSVHNIYKPL VNSGLAFGAK RWVATLDRQC ERLASVMANS  480
IAAGDVGVIS SPKGRKSMLK LAERMLMSFC SGVGASTAHT WTTLSGSGAD DVRVMTRKSM  540
DDPGRPPGIV LSAATSFWLP VPPKTVFDFL RDENSRSEWD ILSNGGLVQE MAHIANGRDP  600
GNSVSLLRVN SANSSQSNML ILQESCSDST GSFVVYAPVD IIAMNVVLSG GDPDYVALLP  660
SGFAILPDGP ENNNNIIKNN NNNDEGGSGG PDVGNGGSLL TVAFQILVDS VPTAKLSLGS  720
VATVNSLIKC TVERIKGAVS CDGA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01557.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841999.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A022QZ870.0A0A022QZ87_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]