PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01470.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HB-other
Protein Properties Length: 1583aa    MW: 177465 Da    PI: 5.7954
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-182884157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      r kR+  t+ qle+Le++++ ++yps+++r+ L+kkl+Lt+rq ++WF+ rR k kk
  Migut.H01470.1.p 28 RPKRQMKTPFQLEVLEKAYATDMYPSEAARAVLSKKLDLTDRQLQMWFCHRRLKNKK 84
                      579****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-17984IPR009057Homeodomain-like
SuperFamilySSF466893.21E-161784IPR009057Homeodomain-like
PROSITE profilePS5007116.1632585IPR001356Homeobox domain
SMARTSM003891.3E-172789IPR001356Homeobox domain
PfamPF000461.0E-152884IPR001356Homeobox domain
CDDcd000865.25E-142884No hitNo description
SMARTSM005711.0E-21484543IPR018501DDT domain
PROSITE profilePS5082716.276484543IPR018501DDT domain
PfamPF027914.3E-17485540IPR018501DDT domain
PfamPF050664.9E-13666733IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.0E-9844885IPR028942WHIM1 domain
PfamPF156134.9E-1410121084IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1583 aa     Download sequence    Send to blast
MEAGSEEENN MNMDQIPPPA AAAAASKRPK RQMKTPFQLE VLEKAYATDM YPSEAARAVL  60
SKKLDLTDRQ LQMWFCHRRL KNKKDSVGMA ATKPDTAGSV QRTGVNHSSR EELMASDPGS  120
RHGSDSRSGK QDSGSGSGSD SGSSQFNNGD GMPTRYFESH GTVMARRVIA RMEAQLGEPL  180
REDGPILGVE FDELPPGAFG EPTVRIEEKD RYKHSYDRNL YGQSDVKHMK AAYDGPSAKT  240
MSIMRGNGHV PRGYGAENQV SSMDIVSQSG RHVQPSSSPR NMNLMTNHED NLHLERKRKS  300
DEVGMGREVQ AHEKKNRKEL EKQDVLRRKK EEQMKKEIER QDRERRKEEQ RIMREQQRQE  360
EKFQREEKRE MERREKFMQK ELLLAERKKQ KEERCKEKEA ARQKIAAERA AARRIAKESM  420
ELMEDERLEL MELAASSKGL PSILSLDYDT LQNLDSFRDA LCVFPPKSVQ LKTPFAIQPW  480
IDSEENVGNL LMVWKFCITF ADVLGLWPFT LDEFVQAFHD YDSRLLGEIH IALIKVIIKD  540
IEDVARMPSG GPGTNQYNAV NTEGGHPHIV EGAYLWGFDI HSWQKHLNPL TWPEILRQFS  600
LAAGFGPQLK KKGIYRVGAN ENDESKGCED IVSTLRNGSA AENAVAIMRE KGVSFQRRSR  660
HRLTPGTVKF AAYHVLALEG SKGLNVIELA EKIQKSGLRD FTTSKTPEAS ISVALSRDPI  720
LFERIAPSTY CVRPAFRKDP ADTESVIAEA KEKIRKYANG FLAGQNADEE ERDDDSDGDV  780
TEAVEADVLA TPSDANKNNE SNEVGSCSVN DKDKIADGTP LQEGTIRIDV EGSPDQDVEI  840
DVRKSGESWV QGLSEGEYSD LSVEERLKAL VALTGIANEG NSIRVNLEDR QGAASALKKQ  900
MWAEAQLDKR RMTEEINTRL YNSSFNAVLE GGLSPLVIVE NKLHDPSTST LGKDGSSVVI  960
EDVNCSVDNR THDTSMDQFI SQAQQNGYTT ERSRLQLKSY IGHIAEEIYV HRSLPLGQDR  1020
RRNRYWLFIA STSSLDPGSG RIFVESPDGH WKLIDSVEAF DALLTSLDTR GTRESHLHIM  1080
LKKIEACFKN CVQKNRLLHS ISYQNRDGGR IGALEVNSSH VCSSAESPRS AVCSSSSDAC  1140
EPSFSFRVQI GRNETEKKNF LKRYEDLQIW MWKECFSSSF LCGMAHEKKR CPPLLGTCDV  1200
CFGTYDAKKD HCPSCHGNKR STLIDESSTI TSNLSPVRIG LIKALLTLLE VTVPSEALRS  1260
CWTEDLRNTW GSKLQRSSSS EDLLQILTEF EGAINREYIT VGFETTEELL SSCVSSKGAA  1320
FEFIDLGSVT QLPWIPKTTA AVALRLLELD SSISYTPNQI ADSQVEPPPK FTLKYAYTKD  1380
IHKAETIEFS RSGFVKEENR DHFTPRISGN NRQVVRKKGS GRPSKSKKKS VGSLSKSGKK  1440
QSIAEGESLA QTLTHGQKHG RGRRTVRRRR TEQKNVTETL NEYFEDQPIN SGKNDGSINN  1500
IVVENYESSH HSIEESDDNA NENVYEFRKL GATIPMDVSE EEEEDADQID DENGYNEEEI  1560
NDEGNHLIDE GSESDASGDY SD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784RRLKNKKD
214681474RRTEQKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830338.10.0PREDICTED: uncharacterized protein LOC105951452
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A022RS830.0A0A022RS83_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1