PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01376.1.p | ||||||||
Common Name | MIMGU_mgv1a027139mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27556 Da PI: 5.2601 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00035 | 195 | 222 | 22 | 54 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksL 54 Lr ++P ++s +++L +Av+Y+ksL Migut.H01376.1.p 195 ALRGIVPGG-----NRMSNVDVLDEAVRYLKSL 222 567777763.....59***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.69E-4 | 165 | 227 | No hit | No description |
PROSITE profile | PS50888 | 10.315 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-7 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-5 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MHSHSPYLSD KPMPPLGDQT GYSYMQNAPI PSLVNGFIPP GIKPLLPLRN LDIHPSTACP 60 KNYIIFDQTE NRSQVMFHPD ISSKMFYPGL EKSIFQENVC KQDENEDGNI SSTLKEDEND 120 IDALLSTEYE DDEENGESED EVMSTARTVA KYEYDSSDSC SNYESVSRKT RRVFGEKSSG 180 TFRKKGERVR KMVKALRGIV PGGNRMSNVD VLDEAVRYLK SLRVEVKKMG LEKIIERVKK 240 SNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01376.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830257.1 | 0.0 | PREDICTED: transcription factor bHLH144 | ||||
TrEMBL | A0A022RTE0 | 1e-169 | A0A022RTE0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01376.1.p | 1e-180 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8124 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01376.1.p |