PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H01263.1.p

Common Name

LOC105951271, MIMGU_mgv1a001418mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 824aa MW: 94925.5 Da PI: 7.204

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H01263.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.3	2.3e-27	65	152	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ +r+ +++t+Cka+++vk++++gkw+++++++eHnHel p Migut.H01263.1.p 65 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESESG---VSRRPGVKKTDCKASMHVKRKREGKWYIHEFVKEHNHELLP 152 5**************************************999877...67778899****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-25	65	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-24	272	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-6	553	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MVDLEDNVEG GEEGIGLNMV DVVDAAETRD GQVSICPKRD HSGIDGDNFE PHDGIEFESH 60 EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GVSRRPGVKK 120 TDCKASMHVK RKREGKWYIH EFVKEHNHEL LPALAYHFRI HRNIKLAEKN NIDILHAVSE 180 RTRKMYVEMS RQSGGSTSSC LSKNEFEHQF DRGRYLALEE GDAQVMLEYF VQIQKEKPSF 240 FYAIDLNEDQ RVRNLFWVDA KSRKDYISFS DVVFFDTSYV KSNEKMPIAL FLGVNNHFQP 300 MLLGCALLAD ETKPTFVWLM KTWLRAMGGQ APKAIISDQD KQLKSAMEEV FPYSYHCFAL 360 WHILERLPET LGHVLRQHEN FMKKFNKCIF KSLTDEEFDM RWWKMVSRFE LQENEWIHSL 420 YVDRKKWVPT FMRDTFLAGL STSQRSESVN SVFDKYIHKK INLKEFVRQY GAILQNRYEE 480 EDMADFDTWH KQPALKSPSP WEKQMSTIYT HAIFRKFQIE VLGVVGCHPK KEKENGGNVV 540 FRVDDCEKTE KFVVTWNEAK SEVSCSCLMF EYKGFLCRHS MIVLQICGLS SIPSQYILKR 600 WTKDAKNRQA VVDGTERIQT RVQRYNDLCK RAIDLGEEGS LSEENYHIAC RALVEALKSS 660 VNINNRTAIE CSSNNSVALR STEEENQVIQ AAKTNKKKIT NKKRKLQPEP EAVGIDTQDS 720 LQQMEHLSSE GIPLNGYYGS QQNVHGLLNL MEPPNDAYYV GQQTMPGLGQ LNSLASSHDN 780 FYGTQQSMSG LGHLDFRQPP FNYGIQDEHN ARPPQLHGTA RNV*

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MVDLEDNVEG GEEGIGLNMV DVVDAAETRD GQVSICPKRD HSGIDGDNFE PHDGIEFESH  60
EAAYSFYQEY AKSMGFTTSI KNSRRSKKTK EFIDAKFACS RYGVTPESES GVSRRPGVKK  120
TDCKASMHVK RKREGKWYIH EFVKEHNHEL LPALAYHFRI HRNIKLAEKN NIDILHAVSE  180
RTRKMYVEMS RQSGGSTSSC LSKNEFEHQF DRGRYLALEE GDAQVMLEYF VQIQKEKPSF  240
FYAIDLNEDQ RVRNLFWVDA KSRKDYISFS DVVFFDTSYV KSNEKMPIAL FLGVNNHFQP  300
MLLGCALLAD ETKPTFVWLM KTWLRAMGGQ APKAIISDQD KQLKSAMEEV FPYSYHCFAL  360
WHILERLPET LGHVLRQHEN FMKKFNKCIF KSLTDEEFDM RWWKMVSRFE LQENEWIHSL  420
YVDRKKWVPT FMRDTFLAGL STSQRSESVN SVFDKYIHKK INLKEFVRQY GAILQNRYEE  480
EDMADFDTWH KQPALKSPSP WEKQMSTIYT HAIFRKFQIE VLGVVGCHPK KEKENGGNVV  540
FRVDDCEKTE KFVVTWNEAK SEVSCSCLMF EYKGFLCRHS MIVLQICGLS SIPSQYILKR  600
WTKDAKNRQA VVDGTERIQT RVQRYNDLCK RAIDLGEEGS LSEENYHIAC RALVEALKSS  660
VNINNRTAIE CSSNNSVALR STEEENQVIQ AAKTNKKKIT NKKRKLQPEP EAVGIDTQDS  720
LQQMEHLSSE GIPLNGYYGS QQNVHGLLNL MEPPNDAYYV GQQTMPGLGQ LNSLASSHDN  780
FYGTQQSMSG LGHLDFRQPP FNYGIQDEHN ARPPQLHGTA RNV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H01263.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830125.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A022RW20	0.0	A0A022RW20_ERYGU; Uncharacterized protein
STRING	Migut.H01263.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Migut.H01263.1.p
Entrez Gene	105951271

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]