PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01211.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23460.7 Da PI: 5.5157 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.2 | 1.4e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvt++kR+ gi KKA+ELSvLCd++va+i+fs+tg+l ++s Migut.H01211.3.p 10 RIENPTSRQVTYAKRKDGIVKKANELSVLCDTDVALIMFSPTGRLTSFAS 59 8*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.062 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-27 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGRKKLAMRR IENPTSRQVT YAKRKDGIVK KANELSVLCD TDVALIMFSP TGRLTSFAST 60 GSRVEDIFLR FVDRPDELRG GPINNEEFLS GRLKQLKYEA QMLEKIAIIE DLEEKLDKLN 120 RKQRESQEKM RYYEPDVDKI SSILEAGVFQ QYLTSAIQRI QLSKAKLLGN QLVHETTENI 180 EETVAVEMED TTSVTDQSIN RNDNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-17 | 1 | 79 | 1 | 79 | MEF2C |
5f28_B | 8e-17 | 1 | 79 | 1 | 79 | MEF2C |
5f28_C | 8e-17 | 1 | 79 | 1 | 79 | MEF2C |
5f28_D | 8e-17 | 1 | 79 | 1 | 79 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01211.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830478.1 | 1e-117 | PREDICTED: MADS-box protein SOC1-like isoform X1 | ||||
TrEMBL | A0A2G9HBM0 | 4e-99 | A0A2G9HBM0_9LAMI; MADS box transcription factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-36 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01211.3.p |