PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01063.1.p
Common NameMIMGU_mgv1a021114mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 676aa    MW: 75061 Da    PI: 7.6585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-193691156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  Migut.H01063.1.p 36 RKHYHRHTSRQIQEMEAFFKECPHPDDRQRKELSRELGLEPMQIKFWFQNKRTQMK 91
                      789999***********************************************998 PP
2START165.44.1e-522004192206
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                       +a +a++elv+ a ++ep+Wv s+    + +n++e+l++f++  +     +++ea+r+++vv m++++ ve+l+++  +W++ +     +a+ 
  Migut.H01063.1.p 200 IAIAAMEELVRVARLGEPLWVPSVdrnfSLLNEEEYLRSFTRVFGpkpngYKSEASRECAVVSMCATNIVEILMEVE-RWSNVFCgvvaRATN 291
                       6789*********************99999**********775549*******************************.*****999999**** PP

                       EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
             START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                       l+vis+g      +a  +++ae+ + sp+vp R+++f R+++ + +g+w++vdvS+d+  + +    ++ ++++pSg++i++++ng skvtwv
  Migut.H01063.1.p 292 LQVISNGvggshnEATLVINAEFHVSSPVVPtRESYFMRHCKHHVDGTWAVVDVSLDHLHSTS----LITCRRRPSGCVIQDMPNGCSKVTWV 380
                       *************9*********************************************9976....7************************* PP

                       E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       e++++++   h+++++l+  gla+gak+w a l+ +c++
  Migut.H01063.1.p 381 ENIEVEEGGGHSIYKPLITAGLAFGAKRWIAILDGYCQR 419
                       **********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-192293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-2131100IPR009057Homeodomain-like
PROSITE profilePS5007116.6823393IPR001356Homeobox domain
SMARTSM003892.0E-173597IPR001356Homeobox domain
CDDcd000862.05E-173694No hitNo description
PfamPF000463.8E-173691IPR001356Homeobox domain
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PROSITE profilePS5084837.517190422IPR002913START domain
CDDcd088757.08E-100198418No hitNo description
SuperFamilySSF559614.78E-25198420No hitNo description
SMARTSM002342.9E-42199419IPR002913START domain
PfamPF018524.7E-43200419IPR002913START domain
SuperFamilySSF559618.46E-16439663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNSNVSEGDD IRRTSDEEIN SKSDNDNSIG DQRPRRKHYH RHTSRQIQEM EAFFKECPHP  60
DDRQRKELSR ELGLEPMQIK FWFQNKRTQM KAQHEHQENT NLRNENEKLR AENMRYKEVL  120
SNASCSTCCG PTPIRETSFQ EQQLVIENAR LRQEIDHISA ITSKYLGKPV TCMTDNPSSS  180
SARRLVSFGT SKKNGRSIDI AIAAMEELVR VARLGEPLWV PSVDRNFSLL NEEEYLRSFT  240
RVFGPKPNGY KSEASRECAV VSMCATNIVE ILMEVERWSN VFCGVVARAT NLQVISNGVG  300
GSHNEATLVI NAEFHVSSPV VPTRESYFMR HCKHHVDGTW AVVDVSLDHL HSTSLITCRR  360
RPSGCVIQDM PNGCSKVTWV ENIEVEEGGG HSIYKPLITA GLAFGAKRWI AILDGYCQRV  420
ASATDIPPSS SNSNYLANEE GRKSLLKLAE RMIGRFCNGV NASINNTWTT LSGIGNDSVK  480
VITRKNVDDP TMPFGIQLCV ATSFWLPIPP KRVFNFLRNL KRRKEWDMLS SGAEFREMAH  540
IVSGDEIGNR VALYQDMSSR EGKMILLQES RTDQTASYVV YAPMDPVYVS ATIGGGDPNH  600
VPLLPSGFAI LPDGPTGGQG RGTAAQVDSG GSLLTVAHQI LVDSSPNAKI SMGSIAMANQ  660
IISCTVDNIK KALIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236RPRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01063.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552080.10.0homeobox-leucine zipper protein ROC1-like isoform X3
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A022QDY20.0A0A022QDY2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]