PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H01040.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 266aa    MW: 30296.1 Da    PI: 9.9502
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H01040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-14107196198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k ++ps+v++  +l lpkkf++ +  +  e++ ++l de gr+ +  +   +++    l++GW+ F   ++L  gD ++F l++  +f  +
  Migut.H01040.1.p 107 FVKCMLPSNVSQGFWLHLPKKFCKVNLPN--EDTPVVLVDELGREHTTSYLLGRNG----LSAGWRAFSMKHKLLKGDLLIFLLTEPCKF--K 191
                       89*********************777433..5567***************666666....9**********************9877777..7 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v ++r
  Migut.H01040.1.p 192 VYIVR 196
                       77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-21102197IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-18104197IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-23105196No hitNo description
PROSITE profilePS5086311.646107198IPR003340B3 DNA binding domain
SMARTSM010196.9E-15107198IPR003340B3 DNA binding domain
PfamPF023624.5E-12107196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRPSTVLLIL ILIFVLKTPQ TSSSEERKKR KRTKMQLESI NMGASAKSKR LKSDKEVCSD  60
NSKKPQSERK RTRDCDIYED EEAKRSVMQR AAELLARLEK EYNLPSFVKC MLPSNVSQGF  120
WLHLPKKFCK VNLPNEDTPV VLVDELGREH TTSYLLGRNG LSAGWRAFSM KHKLLKGDLL  180
IFLLTEPCKF KVYIVRAGKI TENEGAIGLQ TYDFENIKPI SAAKMEDQME ENACTGKTAR  240
QLYLNSLEVV DSHHETKKGK INTRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631RKKRKR
22732KKRKRT
32734KKRKRTKM
42951RKRTKMQLESINMGASAKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H01040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836954.11e-120PREDICTED: B3 domain-containing protein At3g19184-like
TrEMBLA0A022RBQ64e-88A0A022RBQ6_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-26B3 family protein