PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00983.2.p | ||||||||
Common Name | LOC105954974, MIMGU_mgv1a008153mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 384aa MW: 41956.6 Da PI: 9.5204 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.5 | 6.6e-33 | 157 | 212 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhAas+Ggh+vDGCgEfmps g+++++++l+CaAC+CHRnFHR+e e Migut.H00983.2.p 157 SVRYRECLKNHAASMGGHVVDGCGEFMPS-GDDASPESLRCAACNCHRNFHRKEAEG 212 69**************************9.8889*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.3E-30 | 158 | 210 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-22 | 158 | 217 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-31 | 159 | 209 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.225 | 160 | 209 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.98E-20 | 304 | 378 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 312 | 378 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.503 | 315 | 379 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.6E-26 | 317 | 374 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MERRSSQERR DTHTAAAVGM ANSISYGGQD SPVKLPLAPI LSTPPDHHRR GTISMLSTRR 60 GSSIFSPTLT LDHHHHHFNN PPPPPQHHRQ LSPPAPLVQL LQQPLVNEEY SSPDPDPPPP 120 TSTPTTAAAA AASNSNNLAV TPPPPPPPHQ QQQIEGSVRY RECLKNHAAS MGGHVVDGCG 180 EFMPSGDDAS PESLRCAACN CHRNFHRKEA EGQLLQTHHP AYLNPNSTNN NNHRSALFHG 240 SQLPSSAPPP PPPHHHLTKH TLTNSQGFAA RPPTMVNFGG NSGGTAAESS SEDLNMFHSS 300 GGGHNTTTGG PVPPSFKKRF RTKFSQNQKD RMQEFASKIG WRMQKQDEKE VQQFCNEVGV 360 KRQVFKVWMH NNKQSIKKTT QSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-21 | 318 | 375 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00983.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834116.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Refseq | XP_012834117.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A022RJ01 | 0.0 | A0A022RJ01_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00983.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 5e-61 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00983.2.p |
Entrez Gene | 105954974 |