PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00933.1.p | ||||||||
Common Name | MIMGU_mgv1a019356mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 151aa MW: 17415.9 Da PI: 10.681 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 12 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 +g W + Ed +l ++v+ +G+++W+ I+++++ R++k+c++rw++ Migut.H00933.1.p 12 KGHWKPCEDAKLRELVAAYGPHNWNFISEKLQhlSSRSGKSCRLRWYNQ 60 689********************************************96 PP | |||||||
2 | Myb_DNA-binding | 44 | 5e-14 | 70 | 112 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+eE+e+l a+ +G++ W+ I+r++ gRt++ +k++w+ + Migut.H00933.1.p 70 LTEEEEERLMAAHSVYGNK-WAFISRRFFPGRTDNAVKNHWHVL 112 59*****************.******9988***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.408 | 7 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 13 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-9 | 15 | 59 | No hit | No description |
Pfam | PF13921 | 6.3E-14 | 15 | 78 | No hit | No description |
PROSITE profile | PS51294 | 22.971 | 62 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-11 | 66 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-18 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.0012 | 80 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEKMNKKSVC GKGHWKPCED AKLRELVAAY GPHNWNFISE KLQHLSSRSG KSCRLRWYNQ 60 LDPNINKREL TEEEEERLMA AHSVYGNKWA FISRRFFPGR TDNAVKNHWH VLTARKQKHR 120 TSVTPKLTTN SCATRHHLQM GKVSAGVVFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00933.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841316.1 | 1e-110 | PREDICTED: transcription factor MYB44 | ||||
Swissprot | Q5NBM8 | 2e-54 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A022R5H1 | 1e-103 | A0A022R5H1_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 2e-49 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00933.1.p |