PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00704.1.p
Common NameMIMGU_mgv1a021390mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 239aa    MW: 26465.9 Da    PI: 10.4173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00704.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141863147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      + rW+  Ed ll  +v ++G+g W+  a+++  gRt+k+c++rw + 
  Migut.H00704.1.p 18 KSRWSLKEDRLLTSLVDRHGPGKWDFLAQHIK-GRTGKSCRLRWINQ 63
                      689****************************9.***********985 PP
2Myb_DNA-binding39.99.8e-1371113246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +++ eE+ +l+++++++G++ W+ I  +++ gRt++++k+ +++
  Migut.H00704.1.p  71 APFSDEEQRRLLQLHERYGNK-WSMIVCHFP-GRTDNHVKNTYHS 113
                       689******************.*********.********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9691368IPR017930Myb domain
SMARTSM007175.4E-121766IPR001005SANT/Myb domain
PfamPF002498.7E-141863IPR001005SANT/Myb domain
SuperFamilySSF466893.1E-2818111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-222071IPR009057Homeodomain-like
CDDcd001671.88E-122062No hitNo description
SMARTSM007175.2E-769117IPR001005SANT/Myb domain
PROSITE profilePS5129412.8270119IPR017930Myb domain
PfamPF002493.4E-1071114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1872115IPR009057Homeodomain-like
CDDcd001671.52E-772115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEAQKNNEAI RQRMVPYKSR WSLKEDRLLT SLVDRHGPGK WDFLAQHIKG RTGKSCRLRW  60
INQLNPRLDR APFSDEEQRR LLQLHERYGN KWSMIVCHFP GRTDNHVKNT YHSLVGSRYV  120
KGSGGQSSSG IVLKPKPRRG ALPAARYFTR PTVPVGSQSS NVSCQGNNYS GFADPASPAM  180
SNSVSVANVC PNNQGICCGD SVTSDAKSAA LYRAPQPQQG VGIRTYQFID FLGIGNSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26211157101MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26211157101C-Myb DNA-Binding Domain
1msf_C2e-26211157101C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00704.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853736.11e-179PREDICTED: myb-related protein Myb4
RefseqXP_012853737.11e-179PREDICTED: myb-related protein Myb4
TrEMBLA0A022QB531e-170A0A022QB53_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1678945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-35myb domain protein 105