PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H00670.1.p | ||||||||
Common Name | LOC105970948, MIMGU_mgv1a021306mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 538aa MW: 58881.7 Da PI: 7.313 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.7e-30 | 246 | 302 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk se+prsYY+Ct+ +Cpvkkkvers d++v eitY+g+H h+ Migut.H00670.1.p 246 NDGYNWRKYGQKNVKASECPRSYYKCTYINCPVKKKVERSF-DGRVSEITYKGHHIHD 302 8****************************************.**************97 PP | |||||||
2 | WRKY | 106.1 | 1.8e-33 | 423 | 481 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver++ dpk+v++tYeg+H+he Migut.H00670.1.p 423 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYAGCNVRKHVERASADPKAVITTYEGKHDHE 481 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-27 | 235 | 304 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.423 | 240 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-24 | 242 | 304 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-33 | 245 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-22 | 246 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-36 | 409 | 483 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-29 | 415 | 483 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.034 | 418 | 483 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-39 | 423 | 482 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-26 | 424 | 480 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 538 aa Download sequence Send to blast |
MGETTVEDAS GNRKSKPTTI LVPPRGSMES LFSNGSIGGF GFSPGPMTLV SNYFAEQGPF 60 SFSQLLAGAM SSPTTGLLMT NYPPAAAAEQ EEEKEKEKES NSSDDGKNSE SGGGGGGYKR 120 NRPMDLVVAQ PQMPPESLSP MFMVPPGLSP SGFLNSPGFL SPLSSPFGMS HRQALAHVTA 180 QAAFSQTYMQ MQSQLQRSPS IESLAPHHQT SIIPVSTVPD ASKIDSFEVS QSDNKSSNIV 240 ADKPANDGYN WRKYGQKNVK ASECPRSYYK CTYINCPVKK KVERSFDGRV SEITYKGHHI 300 HDPPQSNKRG KDGCALDKTV KSQAKSDVMN RLNEAAYVKC EPVNFQATTQ RLFERNPMIC 360 YNGEVGDSVV VVDDCENNDD DNDCEPVSKR RSVDNGQSIA ASTHETITET KIVVQTRSEV 420 DLLDDGYKWR KYGQKVVKGN PHPRSYYRCT YAGCNVRKHV ERASADPKAV ITTYEGKHDH 480 ELPVGRYSSH GAVNCNSNQF KTQKTANKKP MPSIEMDFGN MDSTPMTLQL KEETIAA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 246 | 483 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 246 | 483 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H00670.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851239.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
TrEMBL | A0A022RVZ9 | 0.0 | A0A022RVZ9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00670.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4314 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-102 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H00670.1.p |
Entrez Gene | 105970948 |