PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00616.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Dof

Protein Properties

Length: 270aa MW: 30514.6 Da PI: 7.841

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00616.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	85.2	6.3e-27	9	66	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++cprC+s +t f yynn +qPr++C++C+r+Wt GG+lrn+P+Gg r+nk++ Migut.H00616.1.p 9 TPKRCPRCNSLDTNFRYYNNNDREQPRHYCRTCKRHWTVGGTLRNIPIGGRPRNNKRT 66 5679***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.1E-26	11	65	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.459	11	65	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-12	17	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEQQPPPPTP KRCPRCNSLD TNFRYYNNND REQPRHYCRT CKRHWTVGGT LRNIPIGGRP 60 RNNKRTRASS SRNANPHPHR HPHPQYLQSL TPLTTMVPQN LYTTMNQPIR HVPTIAPQLS 120 SYYYNDEISC WDAIQSLIQS DGINYNLNAG YQFGSGGNAN AAIPNDWNIQ SMTSQYALPQ 180 QQIPQFVESY QTNNRVNNAA PSLYDNSLVQ PTWPTNSLSQ DVMTNFGSST SNSCPWNNII 240 GTTTDTNTEM DASFVDVDQW LNIPDYGSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	TPKRC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00616.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846307.1	1e-105	PREDICTED: dof zinc finger protein DOF3.2-like
STRING	Migut.H00616.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16144	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-17	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Migut.H00616.1.p