PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00493.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 239aa    MW: 27879.5 Da    PI: 7.656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00493.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-141196191
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                      ff++l++ d ++s  l +p  f ++h+++   +  ++l+  sg++W++k+  +  +g+y++tkGWk+F+ + +L+  Dfv F++d++s+f 
  Migut.H00493.1.p 11 FFQILIHRDFTRS--LKVPLAFGQKHKNI--LTENMRLRIGSGETWDIKV-EQADDGHYYFTKGWKDFALDLKLERSDFVGFTFDDNSTFD 96
                      7788877666665..99*********888..5557***************.3555555*************************99988884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-194105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-205105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.5339103IPR003340B3 DNA binding domain
CDDcd100172.67E-12998No hitNo description
SMARTSM010193.4E-811103IPR003340B3 DNA binding domain
PfamPF023629.6E-121196IPR003340B3 DNA binding domain
PROSITE profilePS508636.428139239IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-6139231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-5139237IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
METKSTTKPS FFQILIHRDF TRSLKVPLAF GQKHKNILTE NMRLRIGSGE TWDIKVEQAD  60
DGHYYFTKGW KDFALDLKLE RSDFVGFTFD DNSTFDVTAW GSDGCGKEYS FPHPYVVVDD  120
DSSEDELLEQ QEEETNVINP KFVIVLQRSH ISRVSICKNY AEEAGLIGKK RVFLEYQPGG  180
YRSSVALDFR SKNMRLNKNG FRLDFAKGWR DFRKATGMHF YRTYSFEFIP WKGVIQVKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00493.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855415.11e-147PREDICTED: B3 domain-containing protein At3g17010-like
TrEMBLA0A022RV021e-159A0A022RV02_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.19e-11B3 family protein