PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00491.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 29911.6 Da PI: 4.6357 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 13 | 88 | 3 | 85 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 vl++ + +k l +p f++++g + +e +l+++ g+ W+vk+ + + ++t GW++Fv++ +L+ +f+vF ++ Migut.H00491.1.p 13 AVLVQDYINK---LQVPPAFVRKCGFNWPE--NAQLRTSCGEIWDVKI--EEFNECKYFTVGWRKFVEDAELRREEFLVFWFN 88 5555555554...569********888555..69**************..44444457999*******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-17 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-18 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.588 | 8 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.79E-13 | 9 | 99 | No hit | No description |
SMART | SM01019 | 4.5E-7 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-8 | 12 | 87 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:1.10.601.10 | 2.7E-4 | 115 | 159 | No hit | No description |
PROSITE profile | PS50863 | 9.446 | 154 | 253 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.41E-9 | 155 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0014 | 157 | 253 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-10 | 160 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAMKKKNRPS FFAVLVQDYI NKLQVPPAFV RKCGFNWPEN AQLRTSCGEI WDVKIEEFNE 60 CKYFTVGWRK FVEDAELRRE EFLVFWFNIN SSIFDVSIFG IGGLERGISV QQNISITEDE 120 LDDDDDDDDD DDDDDDEDDD DDDGDDALAP AGNGPRFDLL LKKHHISRLQ LRKDFVVAAG 180 LLRENAVILE YPPYKRRWTV TLHRYTNVKK FRIDMSRGWS GFRRANDLVC GKTYSFQYIK 240 DKNVVEVKPV EVKPFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00491.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852889.1 | 1e-150 | PREDICTED: uncharacterized protein LOC105972469 | ||||
TrEMBL | A0A022RWB6 | 1e-126 | A0A022RWB6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00491.1.p |