PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H00486.1.p | ||||||||
Common Name | LOC105972505, MIMGU_mgv1a013323mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 23161.7 Da PI: 8.3828 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.2e-38 | 24 | 83 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Migut.H00486.1.p 24 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 83 57899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.2E-33 | 26 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.264 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-24 | 31 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MATGTSERKG TRTSQVVGAP PPEPEHLPCP RCDSTNTKFC YYNNYNFSQP RHFCKSCRRY 60 WTHGGTLRDI PVGGGSRKNA KRSRTTAISG GASSTDGSSV FSSPHHDFRG FPAAAASQLL 120 APFGADHGGA GDAKMCGSFT SLLSTQGPGL WALGGFGIGI GPGLDDVGFG LGRTVWSFPG 180 VAEGGPASGN TWQMESGEAG FVGGDSFTWP DLAISTPGGS FMK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H00486.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP662922 | 7e-71 | KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852923.1 | 1e-162 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 7e-51 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A022RWC0 | 1e-161 | A0A022RWC0_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00486.1.p | 1e-161 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50410.1 | 2e-48 | OBF binding protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H00486.1.p |
Entrez Gene | 105972505 |
Publications ? help Back to Top | |||
---|---|---|---|
|