PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00411.1.p
Common NameMIMGU_mgv1a016214mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 131aa    MW: 14462.2 Da    PI: 8.9874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00411.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-142441055
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +k+g+WvAeIr+p   +kr+r++lg++ ta  Aa+a++ a  +l+g
  Migut.H00411.1.p  2 RKWGKWVAEIREP---NKRTRIWLGSYSTAVAAARAYDTAVYYLRG 44
                      46**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-29158IPR001471AP2/ERF domain
PROSITE profilePS5103219.203152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-26153IPR001471AP2/ERF domain
CDDcd000182.09E-21154No hitNo description
SuperFamilySSF541715.43E-18253IPR016177DNA-binding domain
PfamPF008471.7E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRTRI WLGSYSTAVA AARAYDTAVY YLRGPTAKLN FPEDVSSSVV  60
GEVEELSAAA IREKAVEVGS RVDALQANTS AAANGGHAMN QRSWFRGYQI DLNKKPEPED  120
DPAAVEYCRR *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00411.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234822e-39AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAK1077752e-39AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence.
GenBankAP0025362e-39AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149622e-39AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-39CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856291.11e-91PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE18e-42ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A022RZN43e-90A0A022RZN4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.18e-26cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]