PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00361.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22213.3 Da PI: 7.6885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89 | 6.1e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l+p + +a+q +++ +++k+FG++ ++++++a+p+++r+++++sl++eA r+ +Pv+G+vg++++++++++ Migut.H00361.1.p 2 SCNGCRVLRKGCSDTCILRPSLqsietAAAQGHATIFLAKFFGRAGLISFISAVPDTQRPALFQSLLFEAAGRTVNPVNGSVGLLSSGNWHIC 94 6*********************8888777889************************************************************* PP DUF260 89 qlkaelall 97 q+++e++l+ Migut.H00361.1.p 95 QSAVETVLR 103 ***998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.985 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-23 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDTCILR PSLQSIETAA AQGHATIFLA KFFGRAGLIS FISAVPDTQR 60 PALFQSLLFE AAGRTVNPVN GSVGLLSSGN WHICQSAVET VLRGGALKPL PEFMDPDDSS 120 ECTDIMFKIQ DDPCRSTSLP KVQKRRRSPD DDLDLSLSPD FTGKKSSPLP EKRRHGSPSM 180 NSEESLTTTC QNQPPTEIKL LNLF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | PKVQKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00361.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856442.1 | 1e-149 | PREDICTED: LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 1e-73 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2G9HZ72 | 1e-105 | A0A2G9HZ72_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00361.1.p | 1e-148 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-67 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00361.1.p |
Publications ? help Back to Top | |||
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