PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00297.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family bHLH
Protein Properties Length: 341aa    MW: 38889.7 Da    PI: 4.6415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11170213654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+++L
  Migut.H00297.1.p 170 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMREL 213
                       589*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-14163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9170213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14171223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-5171218No hitNo description
CDDcd048734.80E-4266307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEITEQQSMM IEELIMAPKI DTNFPNDQFL PNHWSNLSNP FDQTLENNWH LPSPNYNNPS  60
PIISEFSYNY NNNPNCSSFG EFQPFLDALT SPDFSSFYDL PPMPAQQDYA ATTNFVQDEE  120
MRFLDTCIDN YGFQAGVEDG STTPQNHDII IEKKSNKSKK PNNGQPSKNL MAERRRRKRL  180
NDRLSMLRSI VPKISKMDRT SILGDTIDYM RELLDKIQNL REQGVDENTN KINLNGAYLK  240
ELKPNEIMQV MRNPPKFDVE RRDEDTRVEV CCTAKPGLLF STLSTMDALG LDIQQCVISC  300
FSDFSLQASC CEVSEHRSVV SIEDVKQALF RNAGYGGRCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00297.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856598.10.0PREDICTED: transcription factor bHLH61
SwissprotQ9LSL14e-75BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A022S0021e-175A0A022S002_ERYGU; Uncharacterized protein
STRINGMigut.H00297.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-71beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]