PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00281.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32935.4 Da PI: 8.2199 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+++v+ +G g W++++ + g++R++k+c++rw++yl Migut.H00281.1.p 16 KGAWTKEEDQMLKKCVQTYGEGKWHLVPLRTGLNRCRKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.2e-13 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + ++E +l+v+++++lG++ W+ Ia +++ gRt++++k++w+++ Migut.H00281.1.p 69 RGIFNQDEIDLIVRLHNLLGNR-WSWIAGRVP-GRTANDIKNFWNTH 113 677999****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.067 | 13 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 14.417 | 68 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-12 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 70 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 71 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.64E-8 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKEMEKNKGV VGGVRKGAWT KEEDQMLKKC VQTYGEGKWH LVPLRTGLNR CRKSCRLRWL 60 NYLRPNLKRG IFNQDEIDLI VRLHNLLGNR WSWIAGRVPG RTANDIKNFW NTHFHKISTS 120 PTTAVGESSR TAVVVKTITA NNIIRPRPRT VSNNNNNNII NYPSDEVIVT TSKLTKETII 180 INDKDINNKL KNNNVEELLD DQSINKWWGD LLEMTEKLDD AEFPPPLLFS DQQYHPLIET 240 TPLLSPGLPP PPPPPHNNNN NNNNDCLNDS GLFLDVDVWE LLNCHDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-20 | 16 | 112 | 4 | 99 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00281.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854403.1 | 0.0 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 8e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | F5CI43 | 1e-110 | F5CI43_9LAMI; MYB2-like protein 2 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-57 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00281.1.p |
Publications ? help Back to Top | |||
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