PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00279.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 106aa    MW: 12356.5 Da    PI: 11.0081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00279.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll ++v+ +G g W++++ + g++R++k+c++rw++yl
  Migut.H00279.1.p 12 KGAWTKEEDQLLRKCVQTYGEGKWHLVPLRTGLNRCRKSCRLRWLNYL 59
                      79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.38763IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-22961IPR009057Homeodomain-like
SMARTSM007172.5E-151161IPR001005SANT/Myb domain
PfamPF002494.6E-171259IPR001005SANT/Myb domain
SuperFamilySSF466894.25E-211387IPR009057Homeodomain-like
CDDcd001677.15E-111459No hitNo description
Gene3DG3DSA:1.10.10.601.4E-56286IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEKNKGVVGV RKGAWTKEED QLLRKCVQTY GEGKWHLVPL RTGLNRCRKS CRLRWLNYLR  60
PNLKRGIFNQ DEIDLIVRLH RLLGNRQFSL SLSRSLLLSL STYNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-14691185B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00279.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF6949972e-66JF694997.1 Mimulus cupreus cell-line inbred line Mcu042 MYB2-like protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854403.13e-53PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV98e-38MY113_ARATH; Transcription factor MYB113
TrEMBLA0A022S0172e-63A0A022S017_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-40myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]