PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00278.1.p
Common NameMIMGU_mgv1a024996mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 258aa    MW: 28936.6 Da    PI: 8.2148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00278.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ l+++v+ +G g W++++ + g++R++k+c++rw++yl
  Migut.H00278.1.p 13 KGAWTKEEDQMLKKCVQTYGEGKWHLVPLRTGLNRCRKSCRLRWLNYL 60
                      79********************************************97 PP
2Myb_DNA-binding41.62.8e-1366110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg + ++E +l+v+++++lG++ W+ Ia +++ gRt++++k++w+++
  Migut.H00278.1.p  66 RGIFNQDEIDLIVRLHRLLGNR-WSWIAGRVP-GRTANDIKNFWNTH 110
                       677999****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.179164IPR017930Myb domain
SuperFamilySSF466899.73E-2711107IPR009057Homeodomain-like
SMARTSM007173.7E-151262IPR001005SANT/Myb domain
PfamPF002498.2E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-211467IPR009057Homeodomain-like
CDDcd001677.76E-111560No hitNo description
PROSITE profilePS5129415.44565115IPR017930Myb domain
SMARTSM007171.2E-1165113IPR001005SANT/Myb domain
PfamPF002491.1E-1167110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2068114IPR009057Homeodomain-like
CDDcd001674.89E-869111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEKNKRVVGG VRKGAWTKEE DQMLKKCVQT YGEGKWHLVP LRTGLNRCRK SCRLRWLNYL  60
RPNLKRGIFN QDEIDLIVRL HRLLGNRWSW IAGRVPGRTA NDIKNFWNTH FEKKSTSPAA  120
ASGGGAGGSS RMAVVKTVNE SNIIRPRPRT FARSQTVAVL PPATNNENPM LEKNTSDLLL  180
AGPINDHNRI SNDENLPSKD DVDVEEEEDQ IDECIRWWGN LLEISENGSD PGEAYPFTGP  240
GLTNDCAAAL DDLWFNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21131147107B-MYB
1gv2_A1e-21131144104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00278.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF6949991e-124JF694999.1 Mimulus cupreus cell-line inbred line Mcu043 MYB3-like protein 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854408.10.0PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A022RX751e-159A0A022RX75_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]