PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.H00213.1.p

Common Name

LOC105976066, MIMGU_mgv1a011451mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 282aa MW: 30553.5 Da PI: 7.904

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.H00213.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.9e-31	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+ Migut.H00213.1.p 4 SCNGCRVLRKGCSDDCSIRPCLdwiktPDSQAHATVFLAKFYGRAGLMNLVNAGPQHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLC 96 6****************************************************************************************** PP DUF260 89 qlkaelall 97 q ++e++l Migut.H00213.1.p 97 QNAVEAVLK 105 *998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.4E-88	1	273	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.379	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLDWIKT PDSQAHATVF LAKFYGRAGL MNLVNAGPQH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQNAV EAVLKGVPIT QIPTDAAENK 120 AGPPLKAYDI RHVNRPEDNL SGSSNDLHRV RNRFRFKRDG AKPRRSRVRV RAGSAGEVRR 180 SPSHESSLSH QSEEAAAAAE TNVGIEDTAR ESESLASAAC ESASEDEGEI ELDLTLGFEP 240 FKRAVKPKEV AVKEAEDDGG AGLCKMELRL DCAVRGFNGS G*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.H00213.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856807.1	0.0	PREDICTED: LOB domain-containing protein 41
Swissprot	Q9M886	4e-96	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A022RX57	0.0	A0A022RX57_ERYGU; Uncharacterized protein
STRING	Migut.H00213.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-84	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Migut.H00213.1.p
Entrez Gene	105976066