PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00190.1.p | ||||||||
Common Name | MIMGU_mgv1a013956mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24381.2 Da PI: 7.1464 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.7e-20 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Migut.H00190.1.p 69 KRKLSEEQVNMLERSFGSEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 121 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.2 | 1.1e-38 | 68 | 159 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + +n++Le+e +L+e+l+e Migut.H00190.1.p 68 RKRKLSEEQVNMLERSFGSEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKAEHESTVVKNCHLETELLKLKEQLNE 159 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.908 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-19 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.82E-16 | 68 | 124 | No hit | No description |
SuperFamily | SSF46689 | 3.25E-18 | 69 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-17 | 69 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 70 | 130 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-6 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MNSEFEDQMV LISQYYPDGM YNNHHFVPEQ TGGGAAAGVV NSKPRRRRKK NKGGGGDEGC 60 GGVEGMLRKR KLSEEQVNML ERSFGSEHKL ESERKDKLAA ELGLDPRQVA VWFQNRRARW 120 KSKKLEEEYS KLKAEHESTV VKNCHLETEL LKLKEQLNEA NRAIQMLSEQ RSDGFSSNSP 180 SSSFSMEGLG NVFYAAENNY FHGMEWDNNI YYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | LRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00190.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856819.1 | 1e-158 | PREDICTED: homeobox-leucine zipper protein ATHB-53-like | ||||
Swissprot | O23208 | 4e-57 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A022RX81 | 1e-150 | A0A022RX81_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-33 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00190.1.p |
Publications ? help Back to Top | |||
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