PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00097.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 453aa    MW: 50377.9 Da    PI: 5.8353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.87e-20224270148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g W++eEd llv++v+++G + W+tIa++++ gR +kqc++rw+++l
  Migut.H00097.1.p 224 KGQWSPEEDGLLVELVEKHGVRKWSTIAQMLP-GRIGKQCRERWHNHL 270
                       799*****************************.*************97 PP
2Myb_DNA-binding58.31.8e-18276318145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       ++rW++eEd +l++a++qlG++ W+ Iar ++ gR+++ +k++w+
  Migut.H00097.1.p 276 KDRWSEEEDSILIEAHRQLGNK-WAEIARSLP-GRSENTIKNHWN 318
                       68********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25218273IPR009057Homeodomain-like
PROSITE profilePS5129430.234219274IPR017930Myb domain
SuperFamilySSF466891.01E-31222317IPR009057Homeodomain-like
SMARTSM007174.6E-17223272IPR001005SANT/Myb domain
PfamPF002491.7E-18224270IPR001005SANT/Myb domain
CDDcd001671.28E-15227270No hitNo description
Gene3DG3DSA:1.10.10.602.0E-21274325IPR009057Homeodomain-like
SMARTSM007171.5E-16275323IPR001005SANT/Myb domain
PROSITE profilePS5129421.537275325IPR017930Myb domain
PfamPF002498.9E-16276318IPR001005SANT/Myb domain
CDDcd001671.03E-12278321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDFDTVHRDN LGLYSKVFEE IPYIPQIMDN YDCGGGGGGG GGGFSSSPPS SHGSSGRVMG  60
GSSSSWNPGP GFYAPNTSSF YDPFDPFQPS SFGKLMMNTT QEFSSPFPAQ DNNNINININ  120
INNSHVRKTF LDDYDCSRAS FQTVDQFHQM NVMSYLQNND GKYFDKDSCL VVSGGDVDND  180
DNADVDDASQ KMNAIINNDV NNKNIIMQQA KRKRVVDKKS EIVKGQWSPE EDGLLVELVE  240
KHGVRKWSTI AQMLPGRIGK QCRERWHNHL KPNIKKDRWS EEEDSILIEA HRQLGNKWAE  300
IARSLPGRSE NTIKNHWNAT KRRQLSSRKN SNSKTNSPLQ NYIKTVIATN TTSDDKGNLD  360
ISSSSSSVSV SASPDGMVNP KPVDNICSKA MKFENASAII NNAAAAEESF KVLMPISTSM  420
ETAAQMHVAT QFDLVKEMDF MEMLSNYNEY YM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-462213251105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00097.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850795.10.0PREDICTED: myb-like protein AA
TrEMBLA0A022RXP10.0A0A022RXP1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-57myb domain protein 118